Detailed information of ANN18497-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:17291892...17297861
NR annotation: XP_020621267.1, cleavage and polyadenylation specificity factor subunit 4-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O95639Cleavage and polyadenylation specificity factor subunit 4 OS=Homo sapiens OX=9606 GN=CPSF4 PE=1 SV=1
Q5FVR7Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus OX=10116 GN=Cpsf4 PE=2 SV=1
O19137Cleavage and polyadenylation specificity factor subunit 4 OS=Bos taurus OX=9913 GN=CPSF4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007834 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00098
all species →		zf-CCHCZinc knuckleDomainInterproscan
PF00642
all species →		zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001878
all species →		DomainZinc finger, CCHC-typeInterproscan
IPR036855
all species →		Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR036875
all species →		Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR000571
all species →		DomainZinc finger, CCCH-typeInterproscan
IPR045348
all species →		FamilyCPSF complex subunit CPSF4-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23102
all species →		CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0098789
all species →		Biological Processobsolete pre-mRNA cleavage required for polyadenylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14404CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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