Gene detail

Detailed information of ANN18726-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:21953853...21959743
NR annotation: CAH3181962.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W2Q1	Retinal homeobox protein Rx OS=Drosophila melanogaster OX=7227 GN=Rx PE=2 SV=2
O97039	Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica OX=6161 GN=RAX PE=2 SV=1
O42358	Retinal homeobox protein Rx3 OS=Danio rerio OX=7955 GN=rx3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009782 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR042634 all species →	Family	Homeobox protein MOX-1/MOX-2	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24328 all species →	HOMEOBOX PROTEIN MOX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN18726-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.