Gene detail

Detailed information of ANN18797-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:23401144...23417894
NR annotation: CAH3153003.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN18797-RA

ATGGCTAACAATATATTATTTATTTTGCCCTGTAGGTTCACCTGCTCTCCAGATCATTTCACTCACACCAGTGTCATTGCACAGACTCTGTCATTATACTTGTCCTTGTTGGATGAATCTTGCATTAAAAAACTTTCAGCCTGTATCAAGTCAGACTGTTCACACTGGCTATCAAAACTTTTTGGGTATGAAAATGCATTGTCCTGCTTCCATGAACATCAATGGGATGGGTTGGTGCGAGTTTGCAGGCTTGCCTTGAGAGTGAAATATCCTAAATTTGGAACAGAAGGGTTTACAGCTCTCTATACCAGGCCTCCTGTTGTTTACATCAGCTCATCTGCTTGCAATGCATTAGGACATTATTTGTGTACTCAGCTTGGTTTACCACAGTCCAGTGTTTGTAAAGTGCCATGCAACACAGTGTTTGGATCACCACACACCATGGACATTGCTGCATTTGAGAGGCTTTTCAATGATGATGTGTCCTGTGGCAAGACTCCTCTCCTTCTTATTGCATACGCTGGAACCCCAGTGGCTGGCCATACTGATAATCTAAGTCGATTGAGAGAGCTTTGTACACAGAATGGACTCTGGCTTCATTTGGAAGGGGACACTCTTGCAACTCTGTGTCTTGAAACAGTTCCCACTTCTTTGAAGAGTGCTCCTGCTTGTGATAGCATGACCCTGAATATAAGCAAGTGGTTTGCCTTGCCCAGTGCACCACACTGTACTTTCTATAGAGCTAAAGATTTGGATTTGGTGGAGGCATCAGGATTGAGTCAAAGCCATGAGCTTGACCGACTGTCTGTACTCCCTCTTTGGATCAGTCTTCAGACTGTAGGTCTAGATAAAATGAGAGAATTGATTTTACACTCTGCACAGCTGGCCCAACAGTTGAGTATCAGCTTGGATGGCATGCCAGCTACTGTGAAGAGGATGTCCCAGCCACACTGTATGTCGCCAGTGGTAGTGTTTAAGTACAAAGCAGCTCCAGTGTCCCCTGGGGAATCTAGTATTCTTGAGGGAGCAGGAGACAATGGATCAGACCAGGATGATGAACAAGATGATACAGAGCTGTCATCTTCATCACACTCCTCTTCTCCTGACCCAAGTTGTGTTCCCTCGTCTGTGAGAGATTCAATTAACCAACAACTTGCCAAATACCTGGCTCAGCAGATACCATCTGTAAAAATTGGCATGGTGGATTTACCTAAGGAAGGATGTTGCATCAGATTTAACCCTGTTCTTTCATCCAGAACATGTGGAACAACAAGTGAAAATGTAGAAGATTTTGTAATTTGTCTTAAAGAAGAAATGGCCAGACTAGATGCTGCACTTCTATGCCAAGAGGAATTTAGGATAGCTACAGAGGGCAAAGAACATGTGGTTATTGTAGAAACTCATGACACATCAACCATTGGAGCTCTGCTGTGTGTCCCTCGATACTGGACTAACAACGACCTTGGGAAGCTGAGGGAGGCTAAGAAAGTCGAACTGAACGACTGGAATAAAGAGGTACTGGCTTTGATCACAGATGGAATGCCAGATGTTTTCAGTAAAGGACGCACACAAGATGGCCTGACTTGCATCATCATTGACAAGGTACCTTCATCATCCTCTGCCGAAGCCATGGTAGATTTTGTTTGCAAAGCAGCAACTGAACTTGAAAGCTCAAGCAAATATCTGGAGCAGATGGCAGATGCAGTACAGAAAGGCATCGAAGCAGCACAGCAAGATTTGGTTAAAGATGCTGAGGAAAAATTGTTAGAAGAGGGCCTGTTGAGACAAGTTCCACTAGTCAGTTCCCTGATGAACTGGCTATCGCCTCTTCCTGAAGAACCCAAAACAATCGGAAGAGCTTTTAACTTAACATCAGGTCATCTACACAGCACAGAAAAAATATACAAATACCACATGCAAGTCCAAGAAGAGGACGAAGAAGAACCAGTACCAGTGACTCCGACAAAATTCTCACCAGCAGCTACACCAACAAAGCCTGATAGTCCATCAACAGCAAACTGA

Transcript

ANN18797-RA

Protein

Uniprot

Uniprot term	Description
Q6P996	Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Homo sapiens OX=9606 GN=PDXDC1 PE=1 SV=2
A7MBC2	Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Bos taurus OX=9913 GN=PDXDC1 PE=2 SV=1
Q6DF78	Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=pdxdc1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00282	Pyridoxal_deC	Pyridoxal-dependent decarboxylase conserved domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050477	Family	Group II Amino Acid Decarboxylases	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR002129	Family	Pyridoxal phosphate-dependent decarboxylase	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42735	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0016830	Molecular Function	carbon-carbon lyase activity	Interproscan
GO:0019752	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04461	PPM1B, PP2CB; protein phosphatase 1B	EC:3.1.3.16	Protein phosphatases and associated proteins	ko01009	deepkoala