Gene detail

Detailed information of ANN18806-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:23534238...23543496
NR annotation: CAH3170024.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN18806-RA

ATGCAGACAAGTGGCCGTATTTTGGAGACTGAGGCCATTTACAGAGAAAACAAAAGTGCAAAGTTACCTTGCAATATGTCGGACAAAGAGTTCACTTTGGAAGAGCTCAACTACTTCCGTGTCTGCTACATCACTGCCAACGTCATCCGGGACGGGCTGCAGACCGTGTTTAAACAAGAATGGGACAGAGTCCATGGATGGAGGCTCGGTCAATGGCAGGACACTGAAAAAAATGGACAGGACTTTTTTAGCATGGAATCCCCAAAAAGTCGAAACAAGAACAAGAGATTCCTGAGTATCATACAAAATGGAAAAACGAATGAATGGGACTGTTCATGTTTCTTCTTTGCAATTCTCTTTTCTGATTCGCTTGGGTCATTGGTGAGTCCTACAGTTGCCATAAACGTCGATGATCTACGTGTTTTCCGCAACAGAGTTTTCGCACATCTTTCTCAAGCCAGTATTTTGGAGACTGACTTTCAGGCCAACGTGAAATGGGTCTTGAACACGTTCACAGCTCTGCATCTTGACACAAAAGAGCTACAGGAAGTCAGTAAACTGAACAGTTTTCCAACTAGGGAACTTCAGCAGCTTCGAGAGCAGGTTGGTATCTTGGAAGAGGAGCTACAAGCCAAGCCTAAATCCTTCATGTGCCTTCCACCTAAGCCATCCCATCAAGTAACTGAACGAAAATCAGAAGTTGAAAATCTGATGCAGACGTTCATGGACCTCCAGAACACCCATGAAGATGGGTCCATTGTGACAGTGTATGTCTCCGGTAACCCCGGTTGTGGCAAGAGTCAGATTGCTCGTGAGGTCGGGAAAAAGTTCCATGATGAGGCAGTTTCTGACGGTAACCAGGACACCTGCGTATTTGTAATGACCTTGAATGCTGAAAGTGAGCAGTCGATACTAGATTCATACTGTCAATTTGCCCGTGAACTTGGGGTTACAGAATACTCGCTGAATAGTATCACTGGGTCAGATTCAAAGTTGAAGCCTGATGAAAGGATTGCCCATCTTAAAACCCTTGTTTCTGCCAAAGCAAAAGACTTTTCCACGTGGCTGGTAATATTTGACAATGCCAATGACTTGAGGGGCCTACGGAATTGCTGGCCTGATGACAAATGGGGTGGACGTGGTAAAGTTCTCGTTACCACTCAGGACAGTGCCAGTGTACCATTTGCTGATCCTTCCTGTGGACATATTTCCCTTAGTCGAGGAATGCAAATGGACGATGCATTGTCTCTTCTCAGAACCATTTGCCAGTTTTCATGTGATGACGAGGAACTAGAGCAATCTGTTGTCATGGAATTAGATTTACAACCCTTGGCAATCGCTTGTGCCGCACTCTATGTTCGCCATTTGCAGGCTGATGGAGTCACAAATCGCGTCAGTCCGGGGACCTCTACCTGGAAGAATTACCTCAAGAAACTAGGAAAGGGAAAGAGGCATTTGACAGAGAAAATTTACGAACAAACAAGCAAGAATTACCCGTTGTCAATGTCCTCAGCCGTCACAATGGCTGTGCTTAAGCTTGTGGAGAATGAAGCTTTGAAACACGTAGTCGATTTTCTGGGTTTGGGTGCACCAGCACCAATTGACCTTGACATCGTTGTCAGTTTCGTGACAAAACAAGAACCAGATCTTGATGAGGATACGACTGCTGCTGACGTAGCGAAGTGCTCTTTGTTGATTCCGCTTGTTCTGGAGGATAGTCGAAGAACTCTCATAACGATGCACCAGGTCGTTCATGATGCCTTCAAGAACTACATACTTGACAAGTACAGCAAGGCGAAGATTGCCTCTCTCACCCGTAAGTTCACGGAGACATTATCTCCTTTTGCACAACATAGTTTGTTTCAATTTGACCTGGAGTTTCACATCTCTTCAAAGCAGATGGCCCCTCATTTGGAATCACTCAGCACTTATTTGGAGGTACCAGCCAAATGGTCTTCAGATGTAACAAGTGATGAAAGATCTGTATTTAAACATTCATTTCTTGACTTTGGTGACATTTGCAGACAACACGACCTTCTTTCCGCAGCCCAAACGTATTTTGAACATGCCCTCGAGATCTTTAATGGTGAATGCAGTGGTGACGATAACCAAATTAAGCTAAAAGCAACCATCCTAAACAATTTAGGCATTGTCTATCATGACTTAGGGCAGTTTAAGAAGGCTCAGGATCACCATGAGCATGCTCTGGTTTTGCTGGAAAGTATAAATCCGAACAACCCATCTCATGAAAAAGCGGATTCTTTTATCAAACTTGGAAAAATCTTTTTCAGTGTTGGCAACCTTGAAAAAGCAAAAGAATATTTTTGCAAGTCTTTAACAATGAGAGAAATTCTGTATGGTGATGAGCACTCTACTGTTGCTGATGCACTTACCAACATTGGGGTAGTCCACAGCGTGTTGGAAGACTTGCAAAGTGCCGAAAACCTTTTCCTAAGATCCTGTACTCTGAGGGAAAGAGTTTTTGGGAAAATGCATCCACGCGTTGCCGATTCTCTGAGTGATCTTGGTGTTGTATACAGCAAATTAGGCCAGCACGAGAAGGCAATACAATACCACACACAAGCTCTGGAAATGAGAAAAAAACTTTTTTTTCCAAATCATATATTGATCTCCGATTCTTTCAATAATCTTGGTCTGGCTTACAAGTTTGTTGGCAAGCTGGAACAAACCAGGCATTGCTATGAATGTGCACTGCGAATCAGGGAGCAAACGTTGGATAAAGAACACCCAGCCGTAGCAGGAATGTTAAGCAACCTTGGTGTGTTGTATATGGATTTGGGTGAATTACAGAAGGCTAAAGAGCTGTTCCACAGAGCATTGCAAACCAGAATCGAAGTGTTGGGCCTTAACCACTGCAAAGTTGGCGACTGTTTGTTGAACCTCGGACTCGTACACGAACGTTGCAATGAGTACGATGTTGCAGCCAGGCATTTTCAGAGAGCTGTGGATATTTATGGATTGACTTATCCTACCGGCCACACATTATACCAGTCCGCAGTTGAAGGCTTAGCACGAGTTTCTCAAAACAATGAGTGTTTTGATTCAACAGAAAGATTCAATTCCAACCCTTCAATTCCATCTCGCTCCGCTGTTCGCTTTCGTTACGCATCCACCAAAAGTAGTACTAAAAGTGCACGGTGCTTAACAGTTTCTCAATCCTGGTGCAAGTCCGGTTTAGTACTGAACTCCCCAAGCTCAATGGTTGACGTCATATTCGACCGCGTATCAAGGACGCCTGGGAACGAGGCTTCTGTTGAGACCACAGGGTCCAGAGGAGACTGCCATCTTCGCATAAGCTTCGCACATCTCTCATTGATTGACACCTTACAGCGTGTTGGAATATACAACGGTTCCATTCTGGTGATCAAGCCTCGAAATCGCCCGCGGGACCGGCCTTCTGGTCCCCAGCGCACCCCGGGCGTGCGCGGGCGAAACCTTTCACGTTTTGCTCCTACAATTCCATCGAATAAGGGAAAAGAAAACTCAGTGTTTGGCCTAAGTGCACTACTTGCTAACACCATGTCACTGGCACCCAAGATTGACGAGGTTCGTTCTGTTGTCCTGGATCTAAAACCTAATTTAGGTTTCTTTACCGAGACGTGGTTAAGAGAGACAATCTGTGACTCATTGTTGCAGATCCCAGGCTACTCATTTATCCATCGTAACCGCACCACAGACCATCACGGCGGTGTTGGCCTCTACATCGAGAATTCTATCAAATTCAAGCACCTAGAAAAACTGTCGGATCCTGACATCGAGGCACTGTGGGCGTGGCTACGACCCAGCCGACTTCCACGCGGAGTTCCCTGTATCGTCGCGGGTGTTATATACCATCCACACTTCAACAACAGCATCAGAGATGCTGCACTTGTGAACTATCTGTCTGCGTCCCTGACTTCTTTGGAAGGAGAGTACCCCGGTTGCGGTTTTGTGTTGTGCGGCGATTTCAACCGCCTAAATACTCGCCGTTTGACCACCCAATTCAAGCTGAAGCAACTAGTAGATAAGCCCACAAGGGGTGACCAAATCTTGGACTTAGTGCTTACTAACCTTCCACAGCTCTACGACTCAAACGCTGTGCAAATCTTTCCCCCCTTTGGCATGTCTGACCACAATGTTGTCTTAGTGAGACCCAAAGCGAGACCCAAGGGCAACGGTTGTAGTATGAGAACCACGGCAAGGCGAGACACACGACCAAGTAGAAAGTTGGAACTCGGACGCTATCTCTCGTCGATTGACTGGTCCCCAGTTAATGGAGATGACTGCGAGGCTAGGTTAAGCATGTTCGTTGATATAATCCAGATTGGTATGGATCACATCATGCCGGTTAAGCACTTCACTGAAGAAACACGTTAA

Transcript

ANN18806-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan