Gene detail

Detailed information of ANN18819-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:23732897...23739136
NR annotation: CAB4036042.1, LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN18819-RA

ATGGCTGATAGACCAGTGCAAATACCTCAAGCCCCGGCTCGTCGTGAAGGTCTTCGTCTGGGAGCGGCTCAGGCTCCACAAGTTCAGCAGGCACAGCAAGTTCTGCAGGTTGCACAACAATTGCAGGTTCCGCAAGTACAGCCGGCCCCGGCAGCGCCACAAGCGCTTCAACCGCCACAAGCGCCGCAAGCGCTACAGCTATTCAAGCTCCGCAGGCTCCGCAAGATGCAGCGCGTGACATTGCAAGGCAAGTATAATGAGTTGAAGGAGGTGATGGACATGCTGACCAAGTCCTTTGTGGACAATCTGTTGAAGCGACGTTTGAGTTTGGCCTTCCGCCCTCTTGTAGAGTTCAATAAGTATGAGGCCTTAGAATTGTCTTTGAGATGCCGGCTGCGAGGGAAGCTTGATCAGCCCAGTGATCGGTTTCGCAACTTCATCTTCCCACTGCTTGGGGACAAAGACCACGAGAAGGTCTTGGATGTTGTAGCCAAGGTCGAGAAGAGTAATCTGCGGCAGCTCCAAAAATCGTCTGGTGCGGGTGGTGTATCAAAGAATAGGAGCTACTTGTCCTCTAGACCGCCTCGGCGATGTTTTTATTGTAAGAAGCCGGGTCATATTAAGGCACAGTGCCTTCAGAGGAAGAGAGATTTTGGTGAATCAAATGGATGCCTTAAAGCCTTTGGCTGGGAGTGGGAAAGGGACTTAGCATTTGATTCTAAAGTGGTCCAAGCTGGAACGAATAGACGGTGTCTCCGATGGGTAGATTGGCGAGGAAACCCTGTTCCTGTCAGCAGCGAGGTGACAGCAAATTCTCAATTCAGATCAATGGTTCTGAAAGTGTCACGTGGGGAAGCTCTTGGAGATGTTGGAGATTTACTCTTTCGAGACCCCGAACATTTTAGGGCGGGCGAGTTACACGAGCATGTTGATACCTGGAAAGAAATTGTCACGTGGAATCCTACGTTTCATCAATCTGAACATTTCTCAGGGGTTTTTAAGGGAGAATCGTATGACTCTGATGTCTCTTGTAAGCCGTTTGTAAAGTTTATTCAACAAACCCTTCTTGATCGCTTAGAAACTGGTGCAGTATCTTTGTTGGGGAAGGTGGTCGTTCCTGGAGCACGACTGTTTACCAAAGAAATGAATGCGGCTATTTCGAAGGGCCATCTTTCTTCCAAGCAAATACGGATATTAATTTCTGATCATTGGACCGATGAAGAGCAATCTTGGGACATTGCCACAAAGGAAGCTACTGCCCTCGAGAGGGTGCTGCTGGCTTTTCAAAATCAGTTGAGGAATTCCCAGGTGGATGCTTTGGTTGATAATCAGGCTGTGGTCCACGCCTGGAACAATCAAAGTGGAAAGAGTGGACCTCTTTATGAAGTGTTAAAGAGGTTGTTCTTTACTACGGTGGAGCTGAATGTGTCTTTACATTTGTCATATACTCCACCAATGATAACCCAGCGGACACTCACTCTCGCCGCCTGTCTACCATGGATAGCAAACTGTGTCCTGCCTTATGGAAGGTTGTTGAGCAAGAGTTTGGAGGCCCTACTGGATCGAGGTGGCAAACCTCAGGTGCATCGAAATGGTTGTGCCTTTTTAGGGCAACGTGGTACTTATTCATGCGGATGCCCCGTGAGACTTTCATACAAGACTGTTGATTCTTACATTGGAAAACTTCGTTCTATCTTCCATGCAATTGGTCGGGATGGCGAATGGGACAGGCGTTTGAGTTTGGGGAATCCGGCGGCGGATAAATCGGTTAAGGACTATCTTCGTTTGATAACGGCTGCAGAGCAGTTGCAGGCTAGGATTACACCTAAACAGGCAACTCCGTTTTTTGTTGATAAGTTAACTCAGCTGTCTCTTCATCTCGACCAGAAACTAGCCTCAGATGATTTGTCTCCAACACAGCGTTATATTGTGGCCCGAGATCAGGCTTATTTTAAATGTGTTTTCTTTAGCGGTGACCGCCCAGAAGATTTAGGTCGTGTGAAAGTCCTGGAGATCTTTCGTTTTCCTAATGACGATGGATTCCTTTTCAATCATCTCTGCCCGTCTTAA

Transcript

ANN18819-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04852	ALOG_dom	ALOG domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR040222	Family	ALOG family	Interproscan
IPR006936	Domain	ALOG domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31165	PROTEIN G1-LIKE2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0009299	Biological Process	mRNA transcription	Interproscan