Detailed information of ANN18835-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:24111885...24138104
NR annotation: CAH3037043.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9BYK83'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7
E9QAM53'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1
Q6DFV5Probable helicase with zinc finger domain OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000671 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13087
all species →
AAA_12AAA domainDomainInterproscan
PF13086
all species →
AAA_11AAA domainDomainInterproscan
PF00773
all species →
RNBRNB domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003593
all species →
DomainAAA+ ATPase domainInterproscan
IPR000571
all species →
DomainZinc finger, CCCH-typeInterproscan
IPR012340
all species →
Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR022966
all species →
Conserved_siteRibonuclease II/R, conserved siteInterproscan
IPR041679
all species →
DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR001900
all species →
DomainRibonuclease II/RInterproscan
IPR050180
all species →
FamilyRNR RibonucleaseInterproscan
IPR047187
all species →
DomainUpf1-like, C-terminal helicase domainInterproscan
IPR041677
all species →
DomainDNA2/NAM7 helicase, helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23355
all species →
RIBONUCLEASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016887
all species →
Molecular FunctionATP hydrolysis activityInterproscan
GO:0046872
all species →
Molecular Functionmetal ion bindingInterproscan
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0004540
all species →
Molecular FunctionRNA nuclease activityInterproscan
GO:0000175
all species →
Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000932
all species →
Cellular ComponentP-bodyInterproscan
GO:0006402
all species →
Biological ProcessmRNA catabolic processInterproscan
GO:0010587
all species →
Biological ProcessmiRNA catabolic processInterproscan
GO:0004386
all species →
Molecular Functionhelicase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25165HELZ2; 3'-5' exoribonuclease HELZ2EC:3.1.13.1
EC:5.6.2.6
Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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