Gene detail

Detailed information of ANN18980-RA in Nanomia septata

Genomic Location: chr7:103779481...103789098
NR annotation: KAF2351994.1, DNA helicase Pif1-like, partial [Trinorchestia longiramus]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN18980-RA

ATGGGAATATTGCAACTTAGgtgccagtcacaattagatttgtcATTAGACATCCATTTTTTGATACCATTCGTATGTGAAATCTGTTCAAAGTTATTTTCTCAAACATGTACTTTGAAAGTTCACTTGAGAATTCATATTACATACTCTTGCAATATATGTGGAAAATTGTTTTCTCAAAATGTTAATTTGATGGATCACTTAAGAACTCACAGAGGTGATAAACCATACTCTTGTAGTATATGCGGAAAGTCATTTTCTCAGAATACAACTTTTAAGGATCACTTAAGAACTCACACAGGTGAGAAACCATTCTCTTGTATTATATGCAgaaaAGTTCACTTACGAATTCATTTATGGGATAAAGCATACTCTGGTAGTATgtgtggaaagtcattttctcaaaatgTAGCTTTGAAGAATCACTTGAAAACGCAATCAGGTGAGAAACTATATTCTTGTATCGTTTTTCAAAACAGTACTTTAAGAGTTCACTTAAGAATTCATTCAGGGGATAAAGCATACTCTTGTAgtatatgtggaaagtcattttctcaaaatgTAGCTTTGAAGAATCACTTGAAAACGCAATCAGGTGAGAAACTATATTCTTGTATCGTTTTTCAAAACAGTACTTTAAGAGTTCACTTAAGAATTCATTCAGGGGATAAAGCATACTCTTGTAgtatatgtggaaagtcattttctcaacATGTAGCTTTGAAGGAGCACTTGAAAAAGCAATCAGGTGAGAAACCTTATTCTTGTAGTATATGCAGAAAGTCATTTTTGCAAAACAGTACTTTAAGAGTTCACTTAAGAATTCATTCAGGGGATAAAGCATACTCTTGTAGTATATGTGGAAAGCCATTTTCTCACAGTGGCGAGAAACcatactcttgcagtatatgtggaaaagCGTTTTCTCAAAACAGTGGTTTGAAAACCCTCTTGAGAACtcactcaggtgagaaacctttctcTTGCAGTATTTGTGaaaagtcattttctcaaaacTGTAATTTGAAAGTTCACTTGAGGATTAATTTAGGAGAGAAAGCTTACTCTTGCAGTATATGcggaaagtcattttctcaaaataatactttgaaaaatcacttgagaattcactcaGTTCATTCATTTTTCTGTGATATTTGCAATAAGAAGTTTTCATGTCAGCATGACCAGAAAGTTCATTTGGAAATACATTTAAGGAAGAAATTTTTATCTTGCATTATGTATTTCACCCACATCAGCTGGAACCTGTCCTATAAGATTATCCTCTTTGATTGGTACTGTCACAGACTACTAAACTATCCAGACGTACATTTCCCAattacgTCCTCTTCAGTTGTGACTGTGCCATATGTGACACTCAaggaatctcaaaattatcctcttgagtttctcaattctattacacctactgatatgcctccacacaaactgaatccgaaggatggttgcactgtgatgttgctgaggaatcttaacagtaaaagaggactgtgtaatggagtcagacttatagtcctcaatatctacaattcagtgttacattgtaagatattgacaggatctcattcagaacaggaagttcttataccaaaatcaaaattagcaccttctgatactaatcttccttttacactacaacgtacccagtttcccatacgattatcatactcaatgacaATTAATAAGTTTCAAGGACAGACATTTGATAATGTTGGTATATTTCTATGTGAACCAATAAGATATGCCCCTTGGAGTGGGGCTGAGCAGCTATCATTAGATTACACTAAAATGAACAACATTCCACCTATTTTTGTAAGACTGGctgtaaATTTGccattatacattaaatcacagtTAAGTTTAAGAAAATTTCTTGTGAAATATGCAATGAGAAGTTTTCTGAAAGAACATTTAAAAACACATTCAGGTGATAAATCTTACTATTGCAACATATGTTCGAAGTCCTTTTGTCAAAACAGTGCTTTAAAAGTTCACTTGAGGATTCACTCTGGTGAGAAACcatactcttgcagtatatgtggaaagtcattttctcaaaacAGTAATTTTAAAAATCACTTGAAAATTCATTCAGGAAAGAAACCTTAG

Transcript

ANN18980-RA

ATGGGAATATTGCAACTTAGGTGCCAGTCACAATTAGATTTGTCATTAGACATCCATTTTTTGATACCATTCGTATGTGAAATCTGTTCAAAGTTATTTTCTCAAACATGTACTTTGAAAGTTCACTTGAGAATTCATATTACATACTCTTGCAATATATGTGGAAAATTGTTTTCTCAAAATGTTAATTTGATGGATCACTTAAGAACTCACAGAGGTGATAAACCATACTCTTGTAGTATATGCGGAAAGTCATTTTCTCAGAATACAACTTTTAAGGATCACTTAAGAACTCACACAGGTGAGAAACCATTCTCTTGTATTATATGCAGAAAAGTTCACTTACGAATTCATTTATGGGATAAAGCATACTCTGGTAGTATGTGTGGAAAGTCATTTTCTCAAAATGTAGCTTTGAAGAATCACTTGAAAACGCAATCAGGTGAGAAACTATATTCTTGTATCGTTTTTCAAAACAGTACTTTAAGAGTTCACTTAAGAATTCATTCAGGGGATAAAGCATACTCTTGTAGTATATGTGGAAAGTCATTTTCTCAAAATGTAGCTTTGAAGAATCACTTGAAAACGCAATCAGGTGAGAAACTATATTCTTGTATCGTTTTTCAAAACAGTACTTTAAGAGTTCACTTAAGAATTCATTCAGGGGATAAAGCATACTCTTGTAGTATATGTGGAAAGTCATTTTCTCAACATGTAGCTTTGAAGGAGCACTTGAAAAAGCAATCAGGTGAGAAACCTTATTCTTGTAGTATATGCAGAAAGTCATTTTTGCAAAACAGTACTTTAAGAGTTCACTTAAGAATTCATTCAGGGGATAAAGCATACTCTTGTAGTATATGTGGAAAGCCATTTTCTCACAGTGGCGAGAAACCATACTCTTGCAGTATATGTGGAAAAGCGTTTTCTCAAAACAGTGGTTTGAAAACCCTCTTGAGAACTCACTCAGGTGAGAAACCTTTCTCTTGCAGTATTTGTGAAAAGTCATTTTCTCAAAACTGTAATTTGAAAGTTCACTTGAGGATTAATTTAGGAGAGAAAGCTTACTCTTGCAGTATATGCGGAAAGTCATTTTCTCAAAATAATACTTTGAAAAATCACTTGAGAATTCACTCAGTTCATTCATTTTTCTGTGATATTTGCAATAAGAAGTTTTCATGTCAGCATGACCAGAAAGTTCATTTGGAAATACATTTAAGGAAGAAATTTTTATCTTGCATTATGTATTTCACCCACATCAGCTGGAACCTGTCCTATAAGATTATCCTCTTTGATTGGTACTGTCACAGACTACTAAACTATCCAGACGTACATTTCCCAATTACGTCCTCTTCAGTTGTGACTGTGCCATATGTGACACTCAAGGAATCTCAAAATTATCCTCTTGAGTTTCTCAATTCTATTACACCTACTGATATGCCTCCACACAAACTGAATCCGAAGGATGGTTGCACTGTGATGTTGCTGAGGAATCTTAACAGTAAAAGAGGACTGTGTAATGGAGTCAGACTTATAGTCCTCAATATCTACAATTCAGTGTTACATTGTAAGATATTGACAGGATCTCATTCAGAACAGGAAGTTCTTATACCAAAATCAAAATTAGCACCTTCTGATACTAATCTTCCTTTTACACTACAACGTACCCAGTTTCCCATACGATTATCATACTCAATGACAATTAATAAGTTTCAAGGACAGACATTTGATAATGTTGGTATATTTCTATGTGAACCAATAAGATATGCCCCTTGGAGTGGGGCTGAGCAGCTATCATTAGATTACACTAAAATGAACAACATTCCACCTATTTTTGTAAGACTGGCTGTAAATTTGCCATTATACATTAAATCACAGTTAAGTTTAAGAAAATTTCTTGTGAAATATGCAATGAGAAGTTTTCTGAAAGAACATTTAAAAACACATTCAGGTGATAAATCTTACTATTGCAACATATGTTCGAAGTCCTTTTGTCAAAACAGTGCTTTAAAAGTTCACTTGAGGATTCACTCTGGTGAGAAACCATACTCTTGCAGTATATGTGGAAAGTCATTTTCTCAAAACAGTAATTTTAAAAATCACTTGAAAATTCATTCAGGAAAGAAACCTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21530	Pif1_2B_dom	DNA helicase Pif1, 2B domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049163	Domain	DNA helicase Pif1-like, 2B domain	Interproscan
IPR050589	Family	Ikaros C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24404	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala