Gene detail

Detailed information of ANN19072-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:29326364...29349985
NR annotation: KAJ7390175.1, TATA element modulatory factor 1 [Desmophyllum pertusum]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN19072-RA

ATGCAAGCCGTAACAGAGCAACACAGTAACAGAGTAACAGAGGAGAAGAGTGACAAGGTGCTATACAAGCGCTCTTTACTAAAACAAGTTGTACTCATGAGTTGGTTTGATACTTCTGGTTTTTCATCTTTCGCTAAAACAGCGTTCTCTCAGGCGCAAAATCTGCAAAAATCCATCGACCGAGTTTTGGATATTAAAGATGAAACCAGTGATGCAGCTCCAAGTTCTTCAGCTTCAAGTAAACAAAAATCTGACTTCTCTTCTGTGTCTACTGGTTCGGCAAGAGAGAGTTTAATGACCAGAAAATCTTCTTCATCCTTGTCTACTACAGTACCCTCAAAATCCCCCAGGAAATCTTCCTCGGGTGACACTGATTCCAAAGACATTGACAGTAATGAAAGCAATTCATTCTGGTCATCATTTCTTGGTGACTCGCTTTCATCATCAACAACAAATAATGATTCTAAAACATCAAATCGTAGAACTGCTGGAAGAAAACCTGGCTCTAGAGTAAGTGGAACAGCAGCTGGAAGAAAAGTTAGAAGCAAAGATGACAGAAAAGAGGCTATTAACACTGCGAGAGATAAAGATAGCATCTCATCTGCAAAACCATTAAAACAGGATAAAAGTGATGGCATTGATATCACAGATTCTACAAAAGTAGAAAGTAATTTATTAGTGCCAAGTGTAAATTTATCGCAACAGCAAGAAACAGGAGATTTTGCCAAAGAATTGTGTAATAAAGTTGAAAACAAAATTTGCTCTGATGTTTCTGAAGTAGGAGAAGGTAACTTACAAAAAGATGATGATGCACAAAACAAGAGTGTTACACCTGTGGAAAGAAGCAAAGGATTCGAGTTAAAGCATTCAAAAACTTACCCTGTTGAACAAAGCCAGAGAGATAACAATGAAGAGCTTGATACACCAGGGAATGACAGTGTTCCTTTGCTTAACATTTCTTTGGAGGCAAGCAGCAAAGATCTTCAAAAAGAAGAACCAATTGCTGCTAATGAAGAACAGGTTTCAGTTGTGGAAGTACAAAATCAAGATCGTGACACACAAGCCATGAATTCTTCTGTATTAGAACAGCCTGAGGAGTCACATGATACAAATGCGATAACTCTTGAAAGAATAGTAAAGACCGATGGTATTATTCATTCACAAAATGCCAGGGAAGTTTCTACTAGAGCAGTTAGCAGTTCAGTAAGCCAAGGTCATGACACGTCTCCTGTTATGGATTCAACAGTCAGTTTTACTGTGGCTACAGACGAAGCTGAACATGCATTTCCCACAGAATCAACTTATCAACATAGATTTCACAAGGGTGAGCCACTTGCTAGCTCAACACCAAATAACTTTTTAAACAAAGAGTCTGACAAAGAAACAAAAATTGGAGAGGCCTCTTCACCGGATCCAAGTGAAGACAGTGATGTCTTGAATAAGAGTGAAGGTTTAGTCAACATATCATTTACTGGTATTAAGGAAAATGAACCACTGTGTGTGAATGAAACAGAACTGATTAAAGATGTAGTGTTTGGTAAAGAAAGCAAACAGTCTGAAGATAGTATTCCACAGCAGCAAGTAAAAGAGATTCCTTGCAAGGAAGTGGAAACACAGCATCTGTCTATGATTAAGGAGAGTGCTGTAACACCAGAGAATGCAGGAGAAAACGAGAGGGGCCTAGTAAAGAATGATGCTAGTTCTGTTGAGAGTACAGAAGACTTGAAGAGGAAAATCAAAGAACTCCAAAATGAAGTCATAAACCTTCAACATGTGGTGGAAGTACGTGAGAATAAGTTAGTTGAACTAAGTAAAGAGAATGTGGATCTACAGGAGACAGCTTCTATACTAAGGAGTCAACTGAAGCAAGCGGAGGCTGCTCTGAAAGAAGATGATGAAGAAGTAGAAGAAGTCAGACAAGAATTTACCATCAGGGTTGCAGCCACAGAAAATAAATTCCAAGCTGCCGCAAAGGAGAGAGATAAGTTGAAGGCACTTTTGGAACAAACAGAGAAAAATCTAAACTCCAAGAATGACCGGCAGTCTGAAGAGTTTACAACTCTACTCAAAGAAAAAGATGATCAAATTGCTCAATTACTAGAGGAAGGGGAAAGGTTGTCTAAACAGGAACTTCAAATTAACAATACAATAAAGAAACTGAGAGCTAAAGAAAAAGAAAATGAAGCACTAATAAAGAAAAACAGCAAAACAATAGAGGAACTAACATCTGAGAATGCAAGACTTACTGAAATCCTAAAAGTGAAAGAAGATACTGAAAAGAAGCAAGCAGATGCCATCACAAAACTGAATGCATATGTTGAAAAACAAGAAGAGAAAGTCACAAAACTCAATTCTGATTTAGATGATGCTAATGAGAAGCTGAGAAGCATGCAAAGCACACTGGATAATGCCTATAAACAACTGGCAGATTTACATAAAGAGAATGCATCTAAAGACAGTGCAGTACAGGAAGCAGCTCTCAGTGCTGAGATGAATGCCAAGGAAGGACTAAGAGTTGCAATGGAGAAGAGGGAAAGACAGTTTAAAAAAGAAATTGAAACATTAGAATTCCAGGTAAGTGATCTTCAGAGTAGTGTTCAAAGAGGTGAGCAGCAGGCCAGTAGAAGAGAAGATAACCTTCGTCAGGAGATTGGTGACCTGCAGCAGAGATTGCAAGAAGCAGAGGCTCGGAATCAAGAACTTACAGAAAGTGTGACGCATGCTACAAGACCACTTTTGAGGCAGATTGAAAACCTGCAAAGCAGCTATGGAAACCATACCCAGACTTGGGAGAGAGTGGAGAGGAACTTAACAGAGAGACTTAATGAGGCTCAGATTCAACTGGCTGAGGCACAAGAGAAGGAACGTGTAGCAACGGAGCATGCGCTGGAGTTAAAGTCTCGAGTGGCAGCTGTGGAGTCGCAGTTGATCACATATCGACAGGACAAGTCACGGCTGGAGGCTACTCTGGAGGTGGAACGAACCAAGCTGGACACTGCAGAGGATACAAGGAGCAGGGAAGCTGCTAGAGCAGAGGCAATGGAAATCAAATACCGAAAAATGATGGAAGATAACAATGTGGAAAAGGCCTTACTTGAACAGCAGCTGGCTGTTGAAAAAAGTAAGATGGAAACAGAGAAGAAAAGATTTCAAAGTGCCATGAATGAGAAGGAGCGAATATTACTGCAGCAATCCAGCCTTTCTGGAGTCCCGCCATCACCTTCTGCCTCAAGTGAACTCTCACAGGATGAGTTACCTGAGGCCTCCCCCCACAGGACACATGTGCGGCAGAGTAGCAGCGGTAGCTTTATTGATGGCATCTCCAGAGGAATCATGGGAGGTAGTACCGCTATGGTGGAACGACTGCAGGCTCAGGTCAAGCAAAAGGATGGCGAAATTGAGCTTTTACAGGAGGAAATCACCTCTCTGCAGAAAACGCGTGATTCGCTTACAGAAGAACTAACCATTCTCACATCAAGGGTAGAAAACCTGGAGCGAGACAGCCGACTGTTGGCTGAATTGCGAACGCGACACAAGGAGCTAGAGCAGCGGCACAATGCTGTGCTGCAAATGTACGGTGAAAAAGCTGAACAATGCGAGGAGCTGAAGATGGACTTGGAAGATGTTAAATCCATGTACAAATCACAGATTCAAGAACTTCTTGGAGCTGCAAGATGA

Transcript

ANN19072-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P82094	TATA element modulatory factor OS=Homo sapiens OX=9606 GN=TMF1 PE=1 SV=2
B9EKI3	TATA element modulatory factor OS=Mus musculus OX=10090 GN=Tmf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005650 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12329 all species →	TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	Coiled-coil	Interproscan
PF12325 all species →	TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022092 all species →	Family	TATA element modulatory factor 1 DNA binding	Interproscan
IPR022091 all species →	Domain	TATA element modulatory factor 1, TATA binding	Interproscan
IPR052602 all species →	Family	Growth and transcription regulation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46515 all species →	TATA ELEMENT MODULATORY FACTOR TMF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20286	TMF1; TATA element modulatory factor	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.