Gene detail

Detailed information of ANN19175-RA in Montipora grisea

Genomic Location: Scaffold_3__1_contigs__length_44392999:37919281...37931996
NR annotation: CAH3122133.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN19175-RA

ATGCGCTTTGCTTCCTTCCTGGCCGACAACCTGAACCATTCCTCCATCAAGGTCTATCTATCAGCAGTGCGCTCCCTTCACATTGACCATGGCCTTCCCGACCCGCTAGTCAACTGTCTTCGTTTGCAGCGTCTGCTAAGGGGTATTAAGCGAGTTCAAGGTCCAGTGTCACCCAGGCGCCTACCTATCACCGTTGATCATCTGAAGGTCATTCAGTGCTCTTTGGACCTGTCTACTAGAGACCATGTGATGTTGTGGGCTGCGTGCTGCTTGGCATTTTTTGGGTTTTTGCGTGCGGGCGAATTCACGGTCAACTCTGCCTTTGATCCTCACACCCATATGACTGTTAGCGACCTGCAAGCGGACTCCTTGGTGAATCCCTCTTGTTTCAAAGTCCGTATCAAGTGTTCCAAGACAGACCCCTTCCGTGCGGGTTGTGATATCTACTTGGGGCGTGGCTCGGGCTCTGTGTGCCCCATAACAGCGTTGGGCACGTACTTGTCTCTGCGTGGGTCTGCTCCAGGGCCCATGTTCTTGTTTAGTGATGGTCGTCCTCTTACCCGGCAGCAGCTATCATCCTTTTTGCAGTCTACCCTACATGGGGCTGGGTACTCCGGCGCCTACTCCGGCCATAGTTTCCGGATTGGGGCGGCGACCACTGCAGCGGCACGTGGTGTTCCGGATCACCTGATCAAAACCTTGGGGCGTTGGTCGAGCGAGGCATACCAGATCTATATCAGAACTCCAATAAGAGCAAGACTTGCTCAAGGTTGGGAGGCAATCAGTGGTGTCCCAGCCTCTCAAGGGGGATTGTTCACTCCGCTTCAACAGAATCTCTTTTATTACATTAATTCATACCAGGACTTGTTTTACTCCAGCCGTACGTTCCAGAATTGTGATGAAATAAGGAATGTCTACTGTCTCCATGCTGTCAATCACATTTTGAAAACTCGTTCAAGAGTAACGAAAAATACAGCTAGAATCGTTCAGTCATGGAAAGACAAAAAAGAAATTGGGGAACTTCGAGATCAAGGATTAACAAGACCCAAGGTCGTCATCCTGGTACCATTTCGAAATGCGGCATTGAAGGTTATTGAAGTTATAATGCAACTCGTCTGCTCAGGAGAAGGGGGCCAAGTTATGAACAAGAAGCGTTTTTACGATGAATTTGGTGATCAAGACGAGGAAAAGAATAATTCCAAAGGTTCCAAACTCAACGACTTCAAGCTCATGTTTACAGGAAACATAGATGATTGTTTTCGAATTGGGATCTCTGTCAGTAGAAAAGCGCTGACATTGTATGCCAAGTTTTACTCTTCAGACCTCATTGTGGCATCACCTCTTGGACTTAGGACTATCATAGGAAATCAAGGTGAAAAGTCCCATGAGTATGACTTTTTGTCATCCATTGAAATTATCATTATGGACCAAGCAGATGTGTTTCTGATGCAGAACTGGGAACATGTCCAGCACATATTTGAACACCTTCACCAGCAACCCAAGGATTCCCATGGTGTGGACTTCTCTCGTGTACGAATGTGGTGCCTTGAAGGATGGCAAGTGCTTCTTTGCTCCATTTGTCAAGTTGTTGTGCAAGTTCCGCAGGCTTATCATCGCTTTGAAAGCTCCAGCTTTGCTGAGGAAGCTGATAAAAGATTCAATTTCTTTATCACCAAGGTTTTGCCAGAATTCAAAGACTCTCCTTTGGGTTACACTGCTATTTTTGTTCCATCATACTTTGACTTTGTGAGACTAAGGAACTATTTCAAGCGTGAAGCCATAGACTGTGCTCAGATTTCAGAGTACTCTCAACACAAAGAAATACAAAGAGCAAGAACCTTCTTTAAGCAAGGCAGAAGGCGGTTTCTCTTGTTCACTGAGAGGTTTTACTTTTTCTACAGATATCGAATCAAAGGAATGAAGAACATCATCTTCTACGAACTTCCACACTACTCTAAATTCTACAGTGACATCTTAAACTGCGTGGGCACTAGAAAGAGAACCTCTGACAATCGGCTTAATCCAGTAACCTGCACAGTCTTGTACACAAAGTTAAATGCACTGCGTTTAGCAGGTGTGGTTGGCACACAACGCTGCAGTCACATGATATCCTCAAAAAAAGATGTGCACATGTTTGTCACTGGTGATGATAAAGCTTGA

Transcript

ANN19175-RA

Protein

Uniprot

Uniprot term	Description
Q68CQ4	U3 small nucleolar RNA-associated protein 25 homolog OS=Homo sapiens OX=9606 GN=UTP25 PE=1 SV=2
Q8BTT6	U3 small nucleolar RNA-associated protein 25 homolog OS=Mus musculus OX=10090 GN=Utp25 PE=1 SV=2
Q5M9G7	U3 small nucleolar RNA-associated protein 25 homolog OS=Rattus norvegicus OX=10116 GN=Utp25 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06862	UTP25	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010678	Family	U3 small nucleolar RNA-associated protein 25	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12933	ORF PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14774	UTP25, DEF; U3 small nucleolar RNA-associated protein 25	-	Ribosome biogenesis	ko03009	deepkoala