Gene detail

Detailed information of ANN19369-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:33310835...33325319
NR annotation: XP_020618510.1, uncharacterized protein LOC110056382, partial [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN19369-RA

ATGGTTCAAGAATACCAGTCACCCGTGAGGGTTTACAAGTATCCTTTTGAAATTGTCATGGCGGCTTATGAGAAACGCTTCCCGACCTGTCATATGATTCCCGTCTTTCTCGGAAGTGAAATTCTGTCTGAATACAAGAGTGAAGACGGAGCAGTTCACAACATCGAGAGAAGATGCAAACTCGACGTAGATGCTCCGTATTTATTGAAAAAGATTATTGGTGTTGAATACGTGTATTTCAACCAAACAAACTGTCTGAATCGACGAGATAGAACTTTGACGATCACTGCTTACAACGAGAGCTTCTCATCTCGAGTTGGAGTCACGGAACACTGCTATTATTCCGTTCACCCCGATAACCCAGACTGGACATGTTTCGAACAGGATGCAAGTTTGGACATCAAGTCTTTCTTTGGTTTTGAGGCTGCTGTGGAGAAGTTGGCTATTAAACTGTATCTTCAGAACATTAAGAAGGGTAAGGAAGTGATTCAATACTACATCGATGAGCTTATCAGCGAAGGGGTAACATACATCGCTCGATTTGAGAATGCACAAGGTCGACCGAGAACAAAGAGTGCATCTGAGGCTTTGGTAAGCAGTGCTGATCAAACTGAAGAAGATGGCGATGCTCCTACAATTGCTAGTTCTGCAGTAGAAGCTGCTAATGTAGTCCCACTGGCATCCAGATCTGATTACAAACTTGACGATGAATACATCCATAAATTTCTTGGCAAATTGAGCCCCAAAGAAGAAAACCAACTTATCCAGCTGCGCAAGAAAGTTAGTGTTACACATCAGGGAAAGATGCCAAATGATGCTCATCTTTTAAGATTTCTGCGGGCACGTGACTTTAACTTAGACAAGGTTTATGAAATGCTTTGTGAGTCCCTGGCATGGAGACGGCACCACAACATAGATAATATACAAGAAATCTGGCAGCCTCCTGAACCACTCCTGAACTACTATTGTGGAGGCTGGCACAACACAGACAAAGAGGGACGGCCATTGTATATTCTCCGGTTGGGTTCAATGGACGTCAAAGGTCTACTGAAGGCTGTAGGTGAAGATGGCTTCCTTAAGCATGTTGTTTCAATAAATGAAGAGGGTCTTAAAATGACAGAAGAACTAACTAAAAAGACAGGGCATCCAATCAGTGGAACTTCAGTGGATTTGCAGTGGAATTTTAAACGGTGTTTGAAAATGTCGAAAGATTTAGAAGCTGTCAAGAAAAAGAGAAAGTTTCTGAGAAAATCTTTAACAGACACGGTGAAGTCAGTCGACGAAGCCCTGTCACAACAAGATAATCATGCACGAATTCAAGTGTTGAAAGATAACATCGCAAGCAAATGGAGCGATTTGCAAGAAGTGCAAGGCACAATGTGCACGATGTTGGAAGATGCTGACATTGATGCCGAGTGTGAGAGTCACAATGAGTATGAAGGGCGTGTGATTGAAAGCATGGCGAAAATGACGAGTTATCTTTCAAGTAAACATTTGCCAGAAGTGAAATTGGCGGGAAGCAACCCACATGTATCTCAGTCGTCTTCTCAAGTACAAGTTAAGCTACCCAAGATCAATCTACCAACCTTTGATGGCAATGTTTTGAGTTGGCAACCCTATTATCAGTCGATAAAAGTTTCGGTAGTCGACAATGCGTCGTTGGCAGATGTCCAAAAATTAGAGTATTTGATGAGATCGCTAAAGGGTTCGGCTGCTGAAGCGGTGAAAGGTTTTGCAGTGGTACAAGCGAATTACCAGCCAGTTTTGGAAATCCTGAAGGAAAGATTTGGGCATACAAGGTTAATCCTCGATGCGCATGTAAGATCCTTGATCCATTTGCCACGTTTGAGCTGTGATGATGCAGCCTCCATGCGTAAATTTTACGATGAAGTGATAGGTCACGTTCGTTCTGTCGAGTCCATGGGTGAAAAGTTTAAATCTGAAACTTTGGCTCCTGTTCTGGTGCCCCTTATCGTGGACAAGCTACCTAAAGAAGTTGTGGAAAAATGGGAACTGGAGCTCAGTGAGGAAATAGCTAAGCAGGACTGTGTAGAAGTGAAAACACTGTTCACTTTCTTGGAACAACTGATTAGAGCTAAAGAGTCTTCCCAACCTCCTTCTCTTGATTCGAAAGCTCCAGCAAAGGAAAATCCTGGAAATCGTGAAAATCGTTTCAAGTTTAACCGCTCGCAAAGGTCATCCACCTCTGCATTATGTGCGACAACGCAAGAGGGCAAGTGTGTCATTTGCTCCAAAAACCATGGTTTGAAGTCATGTGTCAGTTTTCTGTCATTGCCTGTAAAAGAAAGGTTCAGAAAGGCAACGTCTAAGGGTCTGTGTTTCCGATGCCTTGAATCTGGTCATAGAGCTGAAGTGTGCCAGAAGCCTCCATGCAAGCACTGCCAAGGTAGACATCACAGTCTCCTGCATCAAGATTCAGCTCGACCTCACTTGGAAGAAGTTAAGGTGGAATCGGTCCCTGAATTACCATCCCCTTCATCAGGTCCTCCTGTGTCATCTTCAGTTGTGGCAAATTCTGTTGCAGTGGGCTCGGGTGGAAAGGTGATTCTGCAGACTGTACCAGCTATTTTGTGTGGAGTGAATGGGTGTTCAAAAGTTGTGAGATGTTTCTTTGATCCTGGTTCTCAAACATCGTTTGTTCGGCAGAGTGTAATTGATGAGCTTGGTCTTAACGGGAAGAGTGTCAAAATTGTTGTCTCTGGATTTGGAGGAGAGGCTACCAAGAACACTTTGCGGAAGAGAATTACATTTACTGTGGCACCTGTTGATAAATCTGGACAGCCTCAGTGTATTGAAGCGCTTACTACACCAGTAATATGCCGGCCAGCTGAAGCTGTGGATATTCATCCAGCAAGATGGTCTCATCTTCGGAACATAGTATTTCCTGAAGAGTTCCCTAGAGATGAACAGGAGATTGATGTGCTTATTGGTTTGGATTTCTATTATTCCTTCGTGACAAGAGACATTGTAAGAGGACGTTCCAGTGAACCAGTTGCAGTTCGCACAACTTTGGGTTGGGTCTTCTGTGGACCAACAGGTGGTCATGACCGAGAATGCACTGTGTCTATGAATGTTCAAATTGGTGTTGAGGAACAATTGAATGAAACACTTCAAAAGTTCTGGGATTTGGAGTCCATTGGTGTTAGACCTGCTGAAAGTTCAGTTTCTACTACTCATGTTGAAGATATGGTCTTGAAGAAGTTTAAAGAGACTCTAACATACAATGATGGTCGCTATGAAGTATCCTTACCGTGGAAGAAAGATCGCGTTGCATTGAAAGATAATTACCGGCAAGCGGAAAGTAGGTTGTACAATCTAGAAAAGAAGCTGCTCCAAGAGCCAATGAAAGCTACGTCATACCGAGAAGCGATTAACAAGTATGTTGAGAATGGTGTTGCTGAAGAAGTACCTTGTGATGAAGTTACACCGACAGATGGGCGTCCTGTGTTTTATCTCCCCCATCATGCGGTCATTAGAGAAGACAAGCAGACAACCAAGACAAGAGTGGTGTTTGATGCATCAGCTAAAGATAGCAGTGGTGTCTCTCTGAACAGCTGCTTAGAGCCAGGCCCAGCATTGCAGCCAGATTTAGTTGGAATTCTTCTGCGTTTTCGAAAGAATCATGTAGCTATCATGGGTGACATAGAGAAGATGTTCTTACAGATCCGGTTAAAAGAGGAAGACATGGATTCACACCGGTATCTATGGAGAGATTTGGACCCTAAGGCCACGCCTAAGATTTACAGAATGACAAGGGTCACATTTGGAGTTGTTTCCAGTCCTTTTCTTGCCATTGGTACTATTCAAGAGCATGTGAAAAGGTGTAAAGGAACATTCCCTGTTGCATCAAGTGAAATTTTAAGGAACACTTATGTTGATGACTTTGCTTCAGGGAGAGACAATGTGCAGGAAACACTGAAATTGCAGCAAAGTGCAACTGAGCTTATGCAGAAAGCTGCCTTTAATTTGACAAAATGGTCAAGCAATTCGTCTGAGCTTATGGATTCTTTACCTGAGAGGGACAGAGCAGCAGTTAGTCTCGTCAACCTGGAGAGTGATTTAGCAGAAGCACATCCAATGACAAAAGCATTAGGTTTAAAGTGGAATACGATAACTGACAGCCTTGTCTTTGCAATTGATGCGGACATTGTTAAGTCCAGATCAGAGACAGTGTACACAAAAAGAAAAGTGGCGTCTTTAGCAGCAAAGATTTTTGATCCGATTGGTCTAATCGCACCGTTTTCAGTGAGGTCAAAATTGATTCTTCAAAGTTTGTGGACCCAAGGTGTTGGATGGGATGAGGAAATTCCCATGGAAGTCTCATTGAAATGGAATCAGTGGGTTCAAGAACTTTCAGAACTTGAACACGTTCACATTGCAAGATGTTACACTGATTTGTCATTAAGTCAGAATCCTAAAGTTGAGTTACACGCATTTGGTGATGCGTCGGAAGTTGCTTATGCCTCTGCAGTTTATCTGAGAGTTGTTAGTGAAGATGGAAAGGCATCTACCAGTCTTGTAATGTCCAAGACCCGAGTGGCTCCTGTAAGGAAGATTACACTTCCGCGCTTAGAGTTGATGGCTGCTGTAATTACTGCTAGACTTTGTACCTATGTCAAAGGTGCAATCGATTGTCCCATAAACCGCATTGTTTGTTGGACAGACAATTCTTCAACTTTACACTGGATCAGAGGAGCCGCCTCACAGTGGAAACCATTTGTTGCCAATCGTGTTATTGAAATTCAGTCATTGTTAGATCCCAGTGTTTGGAGGTACTGTCCAGGACCGCAGAATCCAGCGGATCTACCTACCCGAGGTTTGTCTGCAAGTCAGTTAAGAGAGAGTCATTTGTGGTGGAAAGGACCCTCTTGGTTGCAAGAGTCCGAAAAAGATTGGCCCGAGGATTTGAAGTCAAAGCCTTCCAGGGAAAATGTTGACCCAGAGAGGAAGAGTAAAGCTAGTGTCAGTTGTGTTGTGCAACCCAAAGAGCCATTCATTGACTTCACAAGATTCAGTAAGTACGGTCGCTTGCTAAGAACTGTTGCTTGGATCAGAAGATTCGTTAGAAACTCAAGGATGAAAGAGGAGGAAAGGATTGACAGCCCTTTAACTGGTTTAGAGATGCAAAATGCAGAAAAATGGTTGATTTTTCATGTACAAGAAGCAAGTTTTGCTGAAGAAATTACGTCAAGTAAACGGCATGGTACAGTGAAGGACAGCAACCTGGCCAATTTGAACCCGTTTATGTGTCCTACTAGTGGTTTTCTTCGTGTTGGAGGAAGAATTCACAAATCACTGTTACCAGAAGAGGAGAAGCATCCTATTATCTTGCCTTCCAACAATCCTGTTGTTAAGTTGTTGATTGATGATGTTCACCGCCGTGAGCTTCATGCTGGAGTTGAACACACTTTGTCAGTTTTGCGACAGAAATTTTGGTTGATCAAAGGACGATCGACTGTCCGTCAGACACTGAGGAACTGTCTAATATGTCGCCATTACCTAACAAAGCCCTTTGGTCAGCGGATGGCACCACTTCCTGAAGACAGAATTAAGCCTGCGCCCCCGTTCACTAATGTGGGACTAGACTTTGCTGGTCCTTTGTATTTGAAAGACAGTGGTGATAAAGTCTATATCTGTTTATTTACATGTGCAGTTACCCGTGCGGTACACTTAGAGTTGGTGTGTAATATGACGACTGAGCGATTTCTCCTTGCTTTGAGACGCATGATTGCAAGAAGAGGAATGTGCAGCATTATTTGGTCAGATAATGCAAAAACTTTCAAGGCTGCTAACAAGGAGCTACAGCAATGTTGGAGAGTATTGGAATCAGACCAAACCCAGAGTGCTTTGTCCGAAAAGAAGATTCAGTGGAAGTTCATAGCGGAGAAGGCCCCATGGTGGGGTGGGTTTTATGAGCGACTTGTAAAGAGTGTTAAGACGCCATTGAAGAAACTATTTGCCAAAGCAATGTTAGATGCCGAGCAGTTAACTACTATTTTGGCTGAAATTGAAGCACAACTGAACAGTCGTCCTCTTACTTACCTGGGTGCAGACCCTGATGACTACAGTGTGATTACCCCTGCACAGATTCTGATTGGCAGAAACCTTCAAGTGTGTCCGACTAAAGACACTCATGTTTCAGAACAGACATCAAGAGCCCTCACCAAACGATTTCAGTATCACCAGAGGCTCGTAAATGGATTTTGGAAGCGTTGGCATGCAGAGTATCTGAAATCCCTGACACCCCTCAAGAAATGGTATAAGATTGGTCGTGAAATCCGTAAAGGTGACTTGGTCCTTGTGAGTGAGGATCGTGTAGCTCGGGGTCAATGGTCACGTGCACGAGTGGAAGACACCCACACAGGCCGCGATGGACTTGTCCGGTCCGTCACCCTGCGGACCTCATCCGGAAGTGTTACTCGCCGTCCAGTGCAGCGGTTACACCTGTTTGAAGCCTGTGATGCTGATATAGCTGCTGAACTTAATTGA

Transcript

ANN19369-RA

Protein

ANN19369-RA

MVQEYQSPVRVYKYPFEIVMAAYEKRFPTCHMIPVFLGSEILSEYKSEDGAVHNIERRCKLDVDAPYLLKKIIGVEYVYFNQTNCLNRRDRTLTITAYNESFSSRVGVTEHCYYSVHPDNPDWTCFEQDASLDIKSFFGFEAAVEKLAIKLYLQNIKKGKEVIQYYIDELISEGVTYIARFENAQGRPRTKSASEALVSSADQTEEDGDAPTIASSAVEAANVVPLASRSDYKLDDEYIHKFLGKLSPKEENQLIQLRKKVSVTHQGKMPNDAHLLRFLRARDFNLDKVYEMLCESLAWRRHHNIDNIQEIWQPPEPLLNYYCGGWHNTDKEGRPLYILRLGSMDVKGLLKAVGEDGFLKHVVSINEEGLKMTEELTKKTGHPISGTSVDLQWNFKRCLKMSKDLEAVKKKRKFLRKSLTDTVKSVDEALSQQDNHARIQVLKDNIASKWSDLQEVQGTMCTMLEDADIDAECESHNEYEGRVIESMAKMTSYLSSKHLPEVKLAGSNPHVSQSSSQVQVKLPKINLPTFDGNVLSWQPYYQSIKVSVVDNASLADVQKLEYLMRSLKGSAAEAVKGFAVVQANYQPVLEILKERFGHTRLILDAHVRSLIHLPRLSCDDAASMRKFYDEVIGHVRSVESMGEKFKSETLAPVLVPLIVDKLPKEVVEKWELELSEEIAKQDCVEVKTLFTFLEQLIRAKESSQPPSLDSKAPAKENPGNRENRFKFNRSQRSSTSALCATTQEGKCVICSKNHGLKSCVSFLSLPVKERFRKATSKGLCFRCLESGHRAEVCQKPPCKHCQGRHHSLLHQDSARPHLEEVKVESVPELPSPSSGPPVSSSVVANSVAVGSGGKVILQTVPAILCGVNGCSKVVRCFFDPGSQTSFVRQSVIDELGLNGKSVKIVVSGFGGEATKNTLRKRITFTVAPVDKSGQPQCIEALTTPVICRPAEAVDIHPARWSHLRNIVFPEEFPRDEQEIDVLIGLDFYYSFVTRDIVRGRSSEPVAVRTTLGWVFCGPTGGHDRECTVSMNVQIGVEEQLNETLQKFWDLESIGVRPAESSVSTTHVEDMVLKKFKETLTYNDGRYEVSLPWKKDRVALKDNYRQAESRLYNLEKKLLQEPMKATSYREAINKYVENGVAEEVPCDEVTPTDGRPVFYLPHHAVIREDKQTTKTRVVFDASAKDSSGVSLNSCLEPGPALQPDLVGILLRFRKNHVAIMGDIEKMFLQIRLKEEDMDSHRYLWRDLDPKATPKIYRMTRVTFGVVSSPFLAIGTIQEHVKRCKGTFPVASSEILRNTYVDDFASGRDNVQETLKLQQSATELMQKAAFNLTKWSSNSSELMDSLPERDRAAVSLVNLESDLAEAHPMTKALGLKWNTITDSLVFAIDADIVKSRSETVYTKRKVASLAAKIFDPIGLIAPFSVRSKLILQSLWTQGVGWDEEIPMEVSLKWNQWVQELSELEHVHIARCYTDLSLSQNPKVELHAFGDASEVAYASAVYLRVVSEDGKASTSLVMSKTRVAPVRKITLPRLELMAAVITARLCTYVKGAIDCPINRIVCWTDNSSTLHWIRGAASQWKPFVANRVIEIQSLLDPSVWRYCPGPQNPADLPTRGLSASQLRESHLWWKGPSWLQESEKDWPEDLKSKPSRENVDPERKSKASVSCVVQPKEPFIDFTRFSKYGRLLRTVAWIRRFVRNSRMKEEERIDSPLTGLEMQNAEKWLIFHVQEASFAEEITSSKRHGTVKDSNLANLNPFMCPTSGFLRVGGRIHKSLLPEEEKHPIILPSNNPVVKLLIDDVHRRELHAGVEHTLSVLRQKFWLIKGRSTVRQTLRNCLICRHYLTKPFGQRMAPLPEDRIKPAPPFTNVGLDFAGPLYLKDSGDKVYICLFTCAVTRAVHLELVCNMTTERFLLALRRMIARRGMCSIIWSDNAKTFKAANKELQQCWRVLESDQTQSALSEKKIQWKFIAEKAPWWGGFYERLVKSVKTPLKKLFAKAMLDAEQLTTILAEIEAQLNSRPLTYLGADPDDYSVITPAQILIGRNLQVCPTKDTHVSEQTSRALTKRFQYHQRLVNGFWKRWHAEYLKSLTPLKKWYKIGREIRKGDLVLVSEDRVARGQWSRARVEDTHTGRDGLVRSVTLRTSSGSVTRRPVQRLHLFEACDADIAAELN

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8Y5H7	SEC14-like protein 1 OS=Mus musculus OX=10090 GN=Sec14l1 PE=1 SV=1
Q92503	SEC14-like protein 1 OS=Homo sapiens OX=9606 GN=SEC14L1 PE=1 SV=2
Q0V9N0	SEC14-like protein 5 OS=Xenopus tropicalis OX=8364 GN=sec14l1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000004 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00650 all species →	CRAL_TRIO	CRAL/TRIO domain	Domain	Interproscan
PF04707 all species →	PRELI	PRELI-like family	Family	Interproscan
PF05585 all species →	DUF1758	Putative peptidase (DUF1758)	Family	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF03765 all species →	CRAL_TRIO_N	CRAL/TRIO, N-terminal domain	Domain	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036273 all species →	Homologous_superfamily	CRAL/TRIO, N-terminal domain superfamily	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR006797 all species →	Domain	PRELI/MSF1 domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR008737 all species →	Domain	Peptidase aspartic, putative	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR011074 all species →	Domain	CRAL/TRIO, N-terminal domain	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955 all species →	RETROTRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN19369-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.