Gene detail

Detailed information of ANN19482-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:36108681...36110488
NR annotation: CAH3014300.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14781	Chromobox protein homolog 2 OS=Homo sapiens OX=9606 GN=CBX2 PE=1 SV=2
P30658	Chromobox protein homolog 2 OS=Mus musculus OX=10090 GN=Cbx2 PE=1 SV=2
Q8VDS3	Chromobox protein homolog 7 OS=Mus musculus OX=10090 GN=Cbx7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009163 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF17218 all species →	CBX7_C	CBX family C-terminal motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052458 all species →	Family	Polycomb group PRC1-like complex component	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR023779 all species →	Conserved_site	Chromo domain, conserved site	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR033773 all species →	Conserved_site	CBX family C-terminal motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46389 all species →	POLYCOMB GROUP PROTEIN PC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0035102 all species →	Cellular Component	PRC1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN19482-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.