Gene detail

Detailed information of ANN19630-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:39178145...39199241
NR annotation: KAJ7340419.1, hypothetical protein OS493_003165 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN19630-RA

ATGGGAAAAAAGCAGCTTCTGTCCAAAGTCAAGCGCCGTTTTATTTTTCCTCCATCAGTTGGCAAGCGTCGCAAGGGTCGTAAGGGTCGTACGGCTCCCAAGCGTCTTCTTGTGGCTTACTGGGGTCAGAACAGCTCAGGGAACCAATATCCTGATAATCCCGAGGACGATCTCGTAGATGTCTGTCAAAACAGGGAGTATGACATTGTAGTCATTGGATTTGTGGTGACATTTTTTGACCCAAACAATAAAGATCAGATGCCAGGGGTCAACTTCGCAAATCATTGCTGGAACCCAGTCTCGCCCGAATACCCCAACCTTTACAGGTGTCCGAATATTGAGGAAGGTATCAACGCTTGCCAGGCGGCGGGAAAGAAAGTTCTCATCTCGCTTGGAGGGGCAACTGGAAATAATGTTCTTGACGATGATCAAGCTGTGGTCCTTGCGCAAAACCTTTGGGATTTGTTTCTTGAAGGAGAAGGACAGCAGGACATCAGACCATTTGGAAGCGCGGTTCTTGATGGAATTGATCTGGACATTGAAGACCACAGGTCAGGTGGCTACGCTCAGTTGGTTGAAAGTCTTCGACAACTGGAAACAGAAGGCACCAAGAAGTACTTAATTACTGGTGCCCCACAGTGCCCCTATCCCGATGCATCTCTGGGCCCCGGAGCTGGTACGGCTTTAGGTGACCAAGGGGCTGAGTTCGATTATCTTTTTGTGCAGTTCTACAATAACTACTGCTACGCGGGAGACCCGGATTGGTTCAATATAGATACATGGCTCGAATTTTCCAGAGAAACTCCAGGGAAAGGCCCTAAGATATGCGTGGGGATGCCGGCTGCTCCTGGGGGTTCGGGAGACGATAAGTACTACAACACACCCGAGGAAGTCGCAGGCATTTATGAGGATCAGGAGAATGAGAAGGATTTCGGCGGCTTTATGTTGTGGGATGGTGCTTGGGACCAAAACAATATCATCGACGGCGAAATGTACAGCTATTATGTCGATGCAATCCTCGATGGGAGTAGTCCCACAGCACCTCCAACAACCCCTGGTGAAGCTACCACAGCCCCGGAACCTCCCCCAACGTCAAGCGAGATAACAACTCCAGTTCCAACCCCAACAACAGCCTCGGGTAAGGAAGAAAGGCGGTGTCTTAGTATCAGTTATAAACCTGCAAGTCTGTATTTGAGCAGCATCCGTTTTAGAGAATGCATTATCCAAGCAGTGTTACTGCACTGGGAGTCGGACATTGAGTTTGTATACCGCCACAACTTGCAGAGGCTCGGTGGTCTCGATGTTACTTTGCTTCCATTCCCTTTTTCAGTCCAAGGGACAGTATTCGGCCTATTAATGACTAAACGATTTTCTTTTACCACAGAATTTTGTGAAGGAAAGGATGATGGTGATTACGCAGACCCTAATAATCCGTATGGATACATCACATGCAGCCACGGGATAGCGTACCCGCGAGATTGCCCTACCGGCCTGGTTATTACAATGCAGATCAAAGACGCGCACGTCATTTTACACGTGCTAATAACCTGGTTCATTCAAAACAGTGTTGGCAAGCATCTCCTTGTGGGTTACTGGGGCCAGAACAGTTCAGGGAACAAGTTTCCTCACAATCCCGAGAGAGAACTCAAAGCTGTCTGTCAAGAGAGGAAGTACGACATTATAGTCATCGGTTTCGTGGTGACATTTTTTAGCAAAAATAATAAAGATCAGATGCCAGAAGTCAACTTCTCAATGCACTGCTGGGACCCAGTCTCGCATGAGTACCCCAACCTTTACAGGTGTCGAAATATTGAAGAAGGCATCAAAGCTTGCCAGGCGGCGGGAAAGAAAGTTCTTATCTCCCTTGGAGGAGGAACTGGAAATAATGATCTTAACGATGCTAAAGCCATTGTACTTGCCCAAAATCTTTGGGATTTGTTTCTTGAAGGGAAAGGCCAGCAAAACATCAGACCGTTTGGAAGTGCGGTTCTTGATGGAATTGATCTGGACATTGAAGACCATAAATCAGGCGGCTACGCTCAGTTGGTCAAAAGTCTTCGACAACTGGAAAAAACGGCAGGCACCAAGAAGTACCTTGTAACGGGTGCCCCACAGTGCCCTTATCCCGATTCATCTCTGGGCCCCGGAGCTGGTACGGCTTTAGGGGACCAGGGCGCACAGTTTGATTATATTTTTGTGCAGTTCTACAACAACTACTGTCAAACGGGAGACCCAGGACAGTTCTACCCAAATTTGAAACGATGGTTCAAATTTGCAGCCAAAGTTAAGCAGATGCACAATTTTGTAATGGTACTACGACGAGGGATTGCGGAAGGTCCCAAGATTTTCGTTGGAATGCCAGCGGCTACTGGGGGTGCGGGGGATCCCAAGTACTACAGAACACCTGAGGAAGTTGCAAAGATTTACGAGAACGTCAAGAACGAGCCAGAGTTTGGTGGATTCATGCTGTGGGATGCTGCGTGGGACCAACAAAACATCATCGACCGCCGACTGTACAGTGACCACATCGGAGACATTATCGAACGTGGTTCAACAGGAAGTACAACAACCCAAGGACCTCCTCCAGCAACCGGCGGAACAACACTTCCAGGAACATCCCCAATCCCAACACCAGGAGCGTCGCCGACCTCAGGGGGAGGTGACGGTAATATAGCAGGCTGTGTAAATTATTGA

Transcript

ANN19630-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29029	Endochitinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CTS1 PE=1 SV=2
P40953	Chitinase 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHT2 PE=1 SV=2
P46876	Chitinase 1 OS=Candida albicans OX=5476 GN=CHT1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001026 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00704 all species →	Glyco_hydro_18	Glycosyl hydrolases family 18	Domain	Interproscan
PF01607 all species →	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR036508 all species →	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR050542 all species →	Family	Glycosyl Hydrolase 18 Family Chitinases	Interproscan
IPR001223 all species →	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR001579 all species →	Active_site	Glycosyl hydrolases family 18 (GH18) active site	Interproscan
IPR002557 all species →	Domain	Chitin binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45708 all species →	ENDOCHITINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0004568 all species →	Molecular Function	chitinase activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01183	E3.2.1.14; chitinase	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.