Gene detail

Detailed information of ANN19680-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:40701844...40739742
NR annotation: CAH3037220.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN19680-RA

ATGGCGGCGAAAGAGGAAGAGCCTCTGACATATAGACTTGATCATTTTTCTGAATTACACGAAGTAACAACATTGATTGAGTCCATAGGATCCATATGTCATGATGATATCTTACTTGAAGCTGCAGAGGAACGCTTCATTGTGATATTGAATAACTACCAAGAGCAGCCGCATTTACTGGATCCACATTTAGATTGTCTTGTACAGAAACTGCAACATATAGTCCGTGATTCGTCAAATCCTGCCAAAGTGATTCGTCAAGCCTTTAAATATTTGTACCTCATCACCAAGGTAAGGGGGCCAAAGTATGTGATGCGTTTGTTTGCTCATGAAGTCACCGATGTTGAACCAGTTCTTGGAATGCTTTCCAGTCAAAATCCTCAAGATTGTGAGACATGGGAGACACGATATGTGTTGTTGTTGTGGCTGTCAATTGTCTGCATGATACCCTTTGACATGGCTCGTTTTGATGGACTTAAAGAAGTCGCTGCTGGAACAGTGGAAAGACGCAGACCAGTAGTGGAGAGAATCCTTGAAACAGCTAAGATGTATTTGTCAGTTCCTGATAAGTCAAGAGATGCTGCAGCATTGGTGATTTCAAAGTTTGTAACCAGACCGGACGTCAAGAAAGAGAAACTGGCTGAGTTCCTTGACTGGTCGTTGATAAGGATGGATAAGGCAAATGGAGAGACAATGAATGGGATGCTGTTACTCACTGGCATCTTAACAACATTAGCCTTGCTGTTTAAACATGGGAAGAGAGAAGATCTTATATCATTTGCTCCCATAGTGTTGAAGCAAACAGGAGCTTGTCAGATATCCAACACGAACAATACACTATTGAGGAAGTTAAATATTAAACTTGTACAGCGTCTTGGTTTGACTTTCTTAAAACCAAGGATAGCAACTTGGAGATATCAAAGAGGAAGTCGTTCCTTGGTGTATAACTTGGCAAATCCATTCTCACAAGGCCAGAATAAAAGATGCCACAATGCAGCAGATTTAAATACAGACCATGAAGAAGAGTATGATATCCCTGAAGAACTTGAGGAAGTGATTGAGAAACTTCTTGCTGGCCTTAAAGACAAGGACACGGTGGTCAGATGGTCGGCTGCAAAGGGGTACGTTTGTACAATTGTTATAAATTTACACTTAGTCTTGTCGCATCTAGTGTACATGTTTGCATATTTAGACATGCCAGAATATCAGTATTTAGTGCCGAGCACTAATTGGGGACACTCCAGATCGAATTGGAATTTGGAAATTTTGGAAATGTTAGTTTTTGAGGAGAGGGGAAAACTGGAGTACCAAGAGAAAAACCTCTCGGAACAAGGACGAGAACCAACAACAAACTTGCTCAACCCACATATGACGTGGAGTCCGGTTGACGATAGCTGTAGTAGTGATCGTGACATGCATTCCATGACCTCTTCAGTTATTGTTTCAAACAGTGTTGGTAGAATAACCGGCCGACTTCCTCAAGAGTTAGCTGATCAGATTGTAGAAAACGTCTTAGAGTTGTTCAGTTTCAGAGAATCAGATTCCGGTTGGCACGGAGGATGTTTAGCACTTGCTGAACTTGGCCGCAGAGGATTACTGTTACCTGACAGACTTCCTGAAGTGGTCCCTGCTGTGCTCAAAGCTTTGTCTTACGACGAAATGAGGGGATCGTACAGTGTCGGTAGCCATGTTAGAGATGGTGCATGCTATGTTTGTTGGTCATTTGCCAGGGCGTATGATCCAAAAGAGATCCAACCACACGTTCATGAAATAGCCAGTAATCGCTTGCTAAATAGAGGATCTGCCGACTGTCTACCCCCTACTATTGATAAGGCCCAATTTGCTGAGGACATTGGGAAGTTTTTTGTACAAAAAATAGTTGATATTAGGAGTCGTCTCGATAGTCAAGGTGATGCTGACTACCATAAACTCGACACAGAAGACATTGAGTCATCCTTCGTACACCTCACTGAATTTCAAATGTTAACGGAACAAGATGTGAAGTCTCTTATACGGTATTCGTCTCTTAAATCTTGTGTTCTGGACCCTATGCCTTCAACTCTAGTCAGCCGATGCGATGTCCTACTCCCTGTACTTATGAAATTGATTAATATGTCCTTAAAGTCTGGTCAATTTCCTGTCCTTTGGAAGGAGGCTCTAGTCCTACCGCTACTTAAAAAACCTGGCCTCGACATTCTCTTCAAGAATTTTCGTCCAGTTAGTAACTTACCATTTGTTTCAAAGCTGACAGAGTCAGCTGTCTATAACCAAACTCATGGCCACATTTGTAAGAACAATCTCTATCCTCCCAATCAGTCATCTTATAGGAAGAATTATAGTACAGAAACAGCGTTGCTGAGAGTGAAAAATGACATCTTGTTAAATATGAACAAACAGCATGTTACACTATTGGTCTTATTAGATCTTAGTGCGGCATTTGACACTGTGGATCACAACGTCTTACTTAGTCGGCTTCACTCAAAATTTGGTATATCTGGGACGGCACTTGAATGGTTTAGTTCCTACCTTAGTGGAAGATCTCAGCGTGTTATGGTCCAAGGCAATTTATCTCAGAAATTGAATTTGGACTTTGGTGTACCGCAGGGCTCTTGCCTCGGACCATTGCTTTTCACGATTTATGCAAGCAAATTGTTTGACGTTATCAAGGAGCACCTCCCTACGGTTCACTGTTACGCTGACGACACTCAGCTGTTTGTGTCCTTTAGTCCAAACAAGAGCACTGGACAATGTGAGGCCGTTAATGCTATTCAGCACTGTGTGAAAGATGTACGTAATTGGATGAACAATGATAAACTGCTTCTCAATGATGACAAAACAGAATTCCTAATTATAGGTACCAAGCAACAATTAGCCAAGGTTAACATTGATCATATTTTAATTGGAGACAGTGTAATTAGACCAAAGGGGGTAGTTAAGAATCTGGGGTCATGGTTAGACTCGACTCTCTCAATGAATTCTCATGTGAATAATATTTGCTCCAATGCTTTTTATTACTTATACAATATAAGAAGAATTAGGAAATATCTGTCAAGGCGGTCCACTGAGACGCTCATTCACGCATTTGTCTCTAGTCGCGTGGACTATTGCAACAGCCTGCTCTATGGCCTGCCAACCTATCAGCTTCATAAGCTGCAGAGAGTCCAAAATGCTGCTGCTAGTTCCCTTGTAACCGCTGCTTTGTTTGATCGTGAAGTGAACTGCAGACGGGCAGCCTCTGGGTTTTATCTCGCACAGGCTGCGTTTCAAGAAAATGTAGGAAGGCAGGGAACTTTTCCACATGGTATTGACATTCTGACGTTAGCAGACTACTATGCGGTTGGAAACAGAGTAAATACGTATTTAAATGTTAGTGTGTCCATAGCTCAGTTTAAGGAGTACACGCGAGCCCTTATCAACAATTTGAGTGATGTCAGGTTGCAGCACTGGGATGGAAATGTTCGTGAGCTGGCATCTCAATCCTTGCATAACCTGACTCCAACAGATCCAGAGTACATAGCTAACACAGTTTTCCCTAAGATGCTGTCACAAACCAACAGCATTGATCTTAACAATCGGCACGGAAACATCCTCGGATGCGCTGAAGTAGTGCATGCTCTACATCTCTGGGCTGGACAGAATGGCAGGTCGTTGACTGAAGTACTCGACAAAGAATGTTTTGAAGTTCTGAAAGACATTGTACCTCAGCTAACGGCAGCAAAGCGTTTCAGGGGCCTTGGTGGCGAGTTCATGCGACAAGCAGTTAGCCAGGTCACTACTGCAAAATCACTTGGAGTGACCATCGATGACAGACTTGATTGGAGTGGCCATATCGAGAAAGTAACAAAGAAAGTCGCTTCTGGTATTGGGGCCATAAAACGAATAAGGCACCTTGTCCCTCAGGCGACCTTACAACTAATATATCAAGCTTTAATACAGCCACACTTTGATTATTGCAACATTGTTTGGGGAAACTGTGGGATAACCTTACGGAATAAGGTTCAAAAGCTACAAAACAGAGCAGCCCGTGTTTTGACCTACTCAAGCTATGACGTAGATGCTGGTCACCTTTTCAAACTTCTAGGGTGGAAAAACCTAGCTTGCCAGCAACAATTTCAAAGAGCTACGATGGTTTACAGGTCTCTGCACGGGTTGGCTCCAAACTATCTTAGTTCTAAATTTGAAAGGCGAGAAGTCGCATATAATCTAAGGGACTCTGAAAATAAACTCAACGTTCCATTACCGCGCACAAACTGTTACAAAAACAGCTTCAGCTATAGTGGCGCCATTCTCTGTAACAGTCTTCCTTTTTGTCACCTGATAGACAAGGTATCGATATCACAACTACCGTGGCACGGTGATCAGATAATCGATTTATTTCAAACCACCATTGATGATAACCTGTCGCACACGGAACCGGATATACAGGAAGGTGCTGTCAGAGCCCTTAGTGCTTTGTGTCAGCAGTATTATGTCAAAGCGGACGGCACAGCAATTGACGGAATACAAGATAGAATTATCACCCATTATGTGGAACAGTTGAAAAGCTCTTCAGAATTTTCAAGAGTCGGGTTTTCTCAAGCTTTAGGATCTCTACCAAAATTTTTGCTGGTCTCGAGGTTAAAGTTGGTATTTTCAGGTTTAATCACAGCCTCGCAGTTAGCGAATGACCCTGGAAAATTCGCTGAGTCCAGAAGGGATGCTCTTAAGGCCCTTGCCAGAATCGCGTGTACCGTGGGGCTGAGCAGGACTGGTAACGAGGAACACGTTGTAACAGAGAACAGTCTTCATGAACTTTATGACGCTTTTATCGCCACCTTGAATGATTACACTATTGACAGTAGAGGCGATGTGGGAGCCTGGGTTCGTGAAGCCAGTATGTCTGGACTGGAAACTTTGACGCGTTTTGTTGTGGAGAAAGATCCTTCGCTTCTTACATCAAAGATCTGTGAAAGCGTAATGCACTGCCTGGCACAACAAGCCTCGGAGAAAATTGATCGCACGAGAGCGCATGCTGGCGAAATATTCCTTAGACTTCTATATATGGACAGTCCTCCTTTGCCTCATATACCACATCATAAGGAACTTCTTGAAATGTTCCCAAGAGATGAGTGTTTAGACATGAATTGGAGTGCTCCTGTCGACTGCTTTCCCCGAATCACGAGGCTCCTGGGTTTGATATCCTACAGACGGCCTGTTCTTCTTGGTTTAACGGTCAGCGTTGGTGGTTTGACCGAGTCACTGGTTCGACATTCCTATTCTTCTTTGCTTAGTTTCTTAAAAGGCATTAACAACAGAATAATAGTCCCTTTGTTCAAGATGCTCGATATGTTGTTTTCAAATGGCTGCTTTGAGGTGTTCACACAAGACGAAAGCCATCCATTCCCTCAGACTGTGTTTAACCTCACAAAGAAAGAGATCTTCAAACTTGGCGACGCAAGGAAGCTTATCACGAGTGTGAACGTGTTTTGTGGATTATTACAGTTTCCGGGAGTGACACGGACGAAATCGTTCCAACAACTTTCTATTTTTCTCTGCCACAAATACCCTCAGGTTCGAAAGACTACCGCTGATCAGCTGTATTCAGCCGCGCTGACATACGATGACATCATCCCAGCAGAAAACCTGGATGACGTGTTAGCAATATTGAGTGAAACTTCCTGGGATTCAAATATTGAAGAACTTCGTGTCACCAGAAACAACCTTTGTGACATATTAGGTATTCCTCGCCCAGTGTTAAAGACCTCCACACCGAAGACAGCCGTCAGTCAAAAGAAAGACGAATTAGAAAGCTACAAAGGTGCGGACAGTGATTTAGTTAGTCGTCATGGATACTAG

Transcript

ANN19680-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BYA0	Tubulin-specific chaperone D OS=Mus musculus OX=10090 GN=Tbcd PE=1 SV=1
Q9BTW9	Tubulin-specific chaperone D OS=Homo sapiens OX=9606 GN=TBCD PE=1 SV=2
Q28205	Tubulin-specific chaperone D OS=Bos taurus OX=9913 GN=TBCD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003126 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12612 all species →	TFCD_C	Tubulin folding cofactor D C terminal	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR022577 all species →	Domain	Tubulin-specific chaperone D, C-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR033162 all species →	Family	Tubulin-folding cofactor D	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12658 all species →	BETA-TUBULIN COFACTOR D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0007021 all species →	Biological Process	tubulin complex assembly	Interproscan
GO:0007023 all species →	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0016328 all species →	Cellular Component	lateral plasma membrane	Interproscan
GO:0034333 all species →	Biological Process	adherens junction assembly	Interproscan
GO:0048487 all species →	Molecular Function	beta-tubulin binding	Interproscan
GO:0070830 all species →	Biological Process	bicellular tight junction assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21767	TBCD; tubulin-specific chaperone D	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.