Gene detail

Detailed information of ANN19686-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:40822829...40828591
NR annotation: CAH3037209.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN19686-RA

ATGTCAGCTTCCAGGATCCCCGATCCATTGCAATTCTGCATCGTTTCAGCCTACCAATCCATAGCTAGAAAACCAGCGATTTACTTTCATAGCGAGTTAGGTTACTTTTCCATCGATCAAGATAGATTTTTCCTGTCGAACAAATCCAAACTCAGCACCTTGAACCTCCCTCAGGACTGCAAACATCTCGACATAGACCTGAACAAGGGATTCGAAGAATGGAAGAACTTGCCGAATGTTCAGCAACACCTGGATTCCATGTTGCTCTGGATTTTGCTCAACAAGGAAAAAATGACAGTTGCAGATCTTGGGCTTAATGTTGACTTCGTGACGTCACGTGGAAACCTTGCACGCATGCTCAACGCCCTGGGCGGCCAAAACAGTAAAGGTTGGAGTATGCTGGCAACACGGTACCGGGACACGGTTTATCTGAGCCATATTGAAAATGACAGCGATAAAGATCTGTCTCTCTTTGGACAGAGGGTGTGTTACTGGGGGAAAAGATTTGAAAAGGAGGTTACCATGCCAGATTGCGGTGAAAGGCTTGAAAGCGACCATGAAACGGCGAGACATGGGCCCATCAAAGCCTACCCAGGGTTCTTTTCGGTGGTACGATTTCAGCTGGAAGACCACACAATAGTTTTGCGAGCGGAAGTAGACGCGCAAACGCAAGTCGGTCAAGTCAACGAAGAGGTTTGGCTTGTATTTTCTTGGTCATTATTTTTTTCTTTTAATTACTTTCAGAGTCAAGGTGAACAGCATTCAGAATACGTGGAACTCAAAGTAACAACTGAAACAATTGTCCGTGCTCATTGGGCCTTCAACCAAAAGAGGTTGGTACCCTGGTGGTGTCAGTCAGTCGTGGCCGGTACCCCGCTCATTGTGTATGGCACCAGAGACTACAATGGCCACGTGAAAACCATCCACGGGATTAGAACTGACGAAATTCCTGACCGTGTTGGGCTGGAAAATCTTGACAAAGACAAGTACTTGCTGTTACTGAGTCGTATGCTTTCTTGGATCAAGAACACTGTCTGCGTCGAAGAAGACGGAACTGTGTATATGATTGAGTGGGATCCCAACTCGCAAGGCACGGGCGTGACAGCTAAAGTGTTACCGCGTGACCTGGACAACGCATTCTTGCGTGACTGGTACATCAACGAGATGGAGGATTATTACGCAGGTTGGCGAAGAGAGCAGCAAAGGAGTTCAGAGAATCAAGTACCTAGAGCCTCCATTCCACGTGACCGTCGTTCTCCTTGTTTGGCGACCACTGGTCATGAAAAACGCAGGCTCTTAGAACCTGATTGGATTAGGAAAGAAGAGATAGGAGAAATGGGAGAAACACAGAGAGAACAAGAAATGAAGATGGACCTTATGAACAAACGCTTTGAGGAATCTTGGCCGAGAACAACAACATCAGTATTCCAGTCCGTCGATGATCTCCGTTTTCAACATGAAAGCCTTGCAGAAGAGTCGAGTGACTGGACTTTTAGGACCGCAAATGCCGGAGAAAGGAGCATGCGCGCTCTTAAAAAACCGCGTTCAAGAGAAAGGGGTGATCAATATCAACAGTCCAGGTCTTCAGGTTTTTATGAAGCTGATTATGAGCGAACAACTCTTGCAACTGATGATCCGCAAAGCTGGTCAAAAAGCGACGCTGTGGAAAGAGGAGATCGCAAGAGAGAATGCTCAAAACCAAGGAAAGAAGATCACGATAGAAAACGAAGGATGTCACCGTTGGCTGAAGATGAGAAGTTTAATCGTGATCAACAAATATCTCGATTTCGCGGCCCACCATCACCATACTCTCAGGGAAACAGGAGAAAGGCGTTCGATGAAACGCGCACTGGGAGACGTAAAGAACAAGACCAACCACGCATGCGATACAGAACGCAGTCGGGAAGGAGAGCTGAAGGTTCTCGTCCCTGGAGATCCAGAGCCGTCTATCCCGCGTCCTGTGGTGAGCGACTATCGTCAAACCCAGGAGCTAAAAGAGTTAAGCGCGATGAAGAGTACGATGGACGGAGACCTCGTCACCGCGGATCTACGAGGCGTGGTATCCGCACAAGAACTGCTTAA

Transcript

ANN19686-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002769 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08652 all species →	RAI1	RAI1 like PD-(D/E)XK nuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039039 all species →	Family	RAI1-like family	Interproscan
IPR013961 all species →	Domain	RAI1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12395 all species →	DOM-3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000956 all species →	Biological Process	nuclear-transcribed mRNA catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034353 all species →	Molecular Function	mRNA 5'-diphosphatase activity	Interproscan
GO:0090305 all species →	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan
GO:0110155 all species →	Biological Process	NAD-cap decapping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN19686-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.