Gene detail

Detailed information of ANN19687-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:40828824...40849824
NR annotation: KAJ7340362.1, Src kinase-associated phosphoprotein 2 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN19687-RA

ATGGAGCCAGTGAACAAAGACGTCAAAGAAGCTGTGTTAAATGCTAATAAGTTTCTTTCAGTCACATTGGCGCAGGAGAAACTATCACCTCCAGCCGAGAAAGAACGCCAATCACTTGCAGAAAAGTTCAAGAATTTAATAACACAACTTGGTTTGCAAAGTGAACAGCCTGGAGTTGGCAAGCCCCCACCACGTCCACCTAAAGGTGGGATACCTATTCCTGCACCTGTGCCTAATACGGATGAGGGAGGAGAGGAGCTTTACGATGACCTAGCCGCTGTAGCAGATGATGACCAGGATTATTCTCCGATGGCTCCAGGTGGCGAGGAAAACGCCGCAGATATTGGAGGCGAAAATTATGAGGTCATGGCAGCAGATTCAGAGACTCCACAGGATGAAGGAGAAGACTATGTGGCCATGGAAGATGACACCACTCCAGTTGAACAGGAAGATTATGAAGAGCCTGGTCAAGCTGAGGAAGGTACTAAACAGGATTCTACACCAGGCGATGAAGATTATGAGATGCCAGGGGCAGAAGATAGCATGGACTATGAAGTTGCAGTTGGATCAGTGGAAACTCCTGCAGACAGTTTGTATGAAGGTGTTGAGACTGCTAACGAAAGTTCAGTTGATGGTTTGACGAGTAAACAAAGATCAGGGACAATGATCTTTGAGAACCTGACAAAGGACACTAAACCCGACAGCATTGAAGGTGTAATTAAGAAAGGTTTTCTGAACAAGCATCGCAAAGACGGGAAGGTTTTCCTTGGGAGCAAATGGCAGAAACGATACTGTGTGGTGCGAAACCATGTGTTGTATTACTTCAAAGACAAGAAATCAGCTAGACAACAAGGATACGTCTTGCTGCCTGGATATCAAGCTGCAATCGCTAACAAGAAAGGCCGTGAGTTCACCCTGACTCATCCAGAAGGACACAGGTCTTATCAGTTTGAATCCACCTCAAAGAAAGAAACAGAGGAATGGATAGCAGCCATACAGAAGGCTGCTAACGCACCTATATCAGAGAGCAACAATGTTCATTTACATGAACTGCGTAATAAGCAGGCATCTGGTGATGAAGACAGCTTGCATTATGAAGACACAGGGCCAAGAAAGGACAGCACAATGGAAGAGGAAGAGGAACCAATAGAGGATGAAGGAGACGTATATGATGACACTAACGAAGATCTGTACGAAGAAGTTGGCAGTGTTCAATCTCCCACTCCCACCCAGCAGTCCAGTCCACAGTTACCAGAATATGAAATTACTGGTCCAACTAGTGTTGTTGCACCAAAGCCTGTGGAGCCAATAATGGAGGAGGATTATGAACTGCCAGAGCAGTCGTCACCAGCACCAGCTCTTCCCCCGCCCCGCCCTGTCAAATCAAAACCACAACCACCTCAAGATGACAGTCCGCCTATTGTCCCACCTCCACGGCCTTCTAAACCTCAGCCACCCCCTCCCACACCACCTGCTTCTGCTCCACCTGTACAGGACAAAGATGCTGATGACTTACCGCCACCCCCTCCCCCAGGAGAAATAGAATTAGAGGACTATGAACCGCTGGAAACCTTTCAGGAGGCCCAAGTTCCTGCCCCTGTTTTACCTCCCGTGCCAGCTGCAGTACCTGTTCGACCTCCCAAGCGCAAGGTATCGCCACCATCAAACGATGCTCTCCCACCAAAACCACAAGAAACAGTTCCCGTGCGACCACTGCGGCCGGGCCCTAAGCCTGTAACCCCAGCACGAGCAGACGAAACTCCAGCAAGTGCTGCGGAAGAGGAAACGAACTGCATCAACTATGCAAATGTCTACCAGGCGCTTTGGGATTGTGCTTCTAATGAGAAGGACGAGTTGGGATTCCGACGAGGGGACCTGATTTACATCTACGAAAAGCCGCATGCTGATTGGTGGATAGGATCCCTGTTTAAACCCCAGGGGTACTCTGTGGGGCTAGTACCTAAAGATTATGTTATGGAAGCGTATGAGCTCAGCGCATATTAG

Transcript

ANN19687-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32LP7	Src kinase-associated phosphoprotein 2 OS=Bos taurus OX=9913 GN=SKAP2 PE=2 SV=1
Q5FVW6	Src kinase-associated phosphoprotein 2 OS=Xenopus tropicalis OX=8364 GN=skap2 PE=2 SV=2
Q6DII7	Src kinase-associated phosphoprotein 1 OS=Xenopus tropicalis OX=8364 GN=skap1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004378 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR037781 all species →	Family	SKAP family	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15129 all species →	SRC-ASSOCIATED ADAPTOR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23471	SKAP2; src kinase-associated phosphoprotein 2	-	Yersinia infection	ko05135	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.