Gene detail

Detailed information of ANN19727-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:41695289...41712597
NR annotation: XP_020622709.1, lethal(2) giant larvae protein homolog 2-like isoform X1 [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN19727-RA

ATGTTTAAGTTTTTTTCAAGGACACGGGATAGGAGCTCAGGTCATTTGAAGGACAAGCTTGGACAGGATTTGTTTCTCTTCAACAAGGCTGTAGAGCATGGTTTTCCACCGAAACCTTCGGCAATTGCTCACGATCCAGAACTGAACTTGTTGGCTGTTGGAACAAGCAATGGGCTGCTTAAAATCTATGGACGGCCCGGAGTGGAGCTTTCAGCTCGTCATCAGGAGGAAACAGTGATCCAAGAGTTACATTTTCTACCAGAACAGGGACGTATCATCAGCGTTTGTGATGATGGGGAGCAGAACACAATCCATCTTTGGGAAATCAACAAGAAGGAAGGCAAATCTGTTCTTGAAGAGGTGAAGACATGTACTCTGGAGGGCAGGCTAAAGAAGATCTCTGTTTGCTGTCTGTCCATGAAAACCAATCGTTTGTACCTTGGAACAGAGGGGGGTAACATTTATCTGCTTGACATCAACTCATTTGAACTCCAAGAGTACATCATTTACCAAGATGTTGTTATGCAAAGTGTACAAGAAGAGAGTAAGACAAATGCAGGCTCAGTGGAGGCCATTCAGGAACATCCAGATGATTCAAACAAGATTTTGATTGGCTACAAAAAAGGTCTCATTGTTCTGTGGAACCATGAGCGATGCAGTGTCCAAGCTACATTCAGCGTCCAGTCGTCTGATCAGCCCCAGGAGGTGGAGAGCGTCAGCTGGCATTCTGATGGAACAAAGTTCATCAGCGCTCATGGCGATGGTAGCCTCACTAAGTGGACTGTGGAAGGAAGTTTAGAAATCCCCAAGGCTGTTACTCCTCTGGGGCCATTCCCCTGTAAAGCCATTACGAAAGTAGAGTGGAGCAGTTCATCTGTGTTCTTCAGTGGTGGGATGCCACGTGCCAGCTATGGTGACAGACACTGTGTGTCGCTTATTCAAGATACAAACTTGGTTGAAGGTGGCGACAACACTCCGCAAGTTGCATTTGACTTTACCTCTCGTGTTGTGGACTTCTTCACTGTGAAGAAAGGAGATGAGCCAGCCTATCTGGTGGTATTATGTGAGGAGGAATTAGTTGTCATTGATCTGGTGACCAAAGAAGCTGGGTTTCCCACCTTCATGAAGCCTTACCTGGTTTGCCTGCACTCTTCTCCAATCACATGTTCATACCACAGCCATGACTGCCCAAAGAGTTTGTTTGATGAAATAGAAAAGGCAGGAACAAAGCAACTGGAAACCGACTTTTCACAGGAGAGTTGGCCTATTACAGGTGGAAAGCCTTTGATTGAAGGCCCAGAAACCAAGGACCTGCTTGTTACAGGGCATGAAGATGGATCTGTGAACTTCTGGGATGTTTCCCAACTTGAAATGCGCCTCATCTACACACTTCAGACAGCCAAATATTTTGTTGGTGAGCATGAAGGCCATGATTCCGAGGCACGGGAGACTGAAGAGGAAGTGTGGCCACCATTCAAGAAAGTTGGCAACTATTGTCCTTACTCTGATGATCCACGATTTGCTGTCACCAAGATCATCTTCTCATCAGGTTCAAAGACCTTGACAGTGGCTGGAAATGGAGGTCAGGTTCTCATCTTTGACCTCTCAGAAGAGGAGACAAGTGTGGAAGCACAGTTGATTGAGGTTGACTTCACTGAAGACAAAGAGAACTTCCAGTGGAAAGGCCATGGTCCACTCCTTCCTAAGGAAGGTTCAATCACCATTCCAGCTGGCTTCAAGCTGCAAACAGGCCTCCAGCTTATCCCAGCTGCCCCAGTCAGTGCATTGGTGGTGGAATCTCGTTGGGGACTCCTGGCAGCAGGAACTGTCCATGGATTTATCTTGTATGATTATGTTAACAAAAAGACAGTCACTACTAAATGGACAGTCAGTCAAGAAACTGATAGTGGAGAGCATCTTTCAAGAAGAAAATCCTTTAAAGAGAGCATCAGAAGATCTTTCCGCCGCCTGCGTTCTCGTAAAGGATCTCGGAGTGGTGCAGAAAAGACACCCAAAAAAGAAGGAGAGGCTGCAGCGTCACCTACACAAGAGGCAGTAGCATCACCAGTGTCGCGGCTTGTTGAGGAGAGTCGTGTGGATGAGAGTGTTCTTAGCATGGTGCGCTGTTTGTACTTTGTGGATACCTTTGTCAGGGATGGAGTACACCACTGCCCGTCCCTGTGGGCTGGCACTAATGCTGGGCACATCTATGTGTTCTACCTGACCATCCCTGATGATGAGAAACGAACAGAGGAGGAAGTTCAAGTGGAGATCGGCAAGGAGATCAAGCTGAAACACAAAGCACCTGTCGTATCTATGTTTGTTGTTGATAAGGATGGAATGCCCCTTCTAGGTGATGTCATGGAGGATCAAGGCAAAGAGCCAGACATGAGTGGAACACATTCATTAGTGATTTGTTCTGAAGAACAGTTCAAGGTCTTCAGTTTGCCGCACTTGAAAGCTCGTAACAAAGAAAAACTCACAGCTATTGATGGTTCAAGAGTTCGCAAGATTGGCTTGATCAATGTCAGAAGCAAGAACGACGACTCTGGAATGGTTTATCACTGCCTGGCATGTGTAAGCAATCAAGGAGATCTGATAGTCTATTCTGTTCCTAACCTGAAGGTGCAGGTCAAGGCTTCTGCCATGAGAAAGTCAGATGTGGATGCCATTAGATCTTTGGTATTCTCTGTCAGCGGGCAAGGATTCTACCTCAGCTCCAGGAGTGAGATGCAGCGCTTTACACTCTCTGCAACAGATTTATTACATCCAGATTGTGTGTTGGAGCTTGCAGAGGGAATGAGACCTCCTGAGCCAGAACCGGAAGTCGTCGCTGAAGAGACAGAAGAAGAAAAGAAGGAAAGAAAGAGCTCAACATCCAGCTCGTCATCATCCTCATCCTCATCTGATGACGAAAAGGATGAGGAAAAGAAAAAGGCGAAGAAAGAGAAAAAAGAAAAGAAGAAGAAAGCCAAAGAGGCTGAAGTTGCTGCTGTAGCTGTTGCCTCAACAGAAGAAGCTGTTGATCTAGAAGCAGTTGTTCCAGAAGTACCTGAGGAAAAGAAGGAAGAAGTTGAAGAAAAGAAAGAGGAGTTGGAAGAAAAAAAACCAGATGATGATGCTGCTGCTCTTGTAGTAGCTGCCGAGGGAGGAACAACTATAACGGAGGTTGTTGTCTCGGAGAAACGATCCTACACCCACCAATCATCCAAAACTGAGGAGAAAGAAATCCCGGAAGAACTTGTTGGTGAAGAGACCAGCATGTTCTCATCAACCATGGAAAGTTCATCTTCTTTCACTTCAACCACCCGTGTTGTTACTTCTAAGCAAGTCATCAGCTCTACTTCCACCACAGAGCGAATAATTATGTCAGAAGGAACCAAAATAGAAGCACTTGAGAATGGTGAATCTGAAAAGCTCATGTTGAATGACTCTGATCTCAAGAAGGCAGCTGAGGATATGCTGAATGATGCTCATGATCAGATGGATTCTGTAGGTTCTGATAATGATAAAGAACTCAGTGCGGTCAGGGGGAAAGGATTCAAGAGCCCTGGCAAACTTTACACAAAGAAAACGACTGGAGGAGAGTCTGAGGATGCAGAATCTTGA

Transcript

ANN19727-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80Y17	Lethal(2) giant larvae protein homolog 1 OS=Mus musculus OX=10090 GN=Llgl1 PE=1 SV=1
Q6P1M3	LLGL scribble cell polarity complex component 2 OS=Homo sapiens OX=9606 GN=LLGL2 PE=1 SV=2
Q5RCX2	LLGL scribble cell polarity complex component 2 OS=Pongo abelii OX=9601 GN=LLGL2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003607 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08596 all species →	Lgl_C	Lethal giant larvae(Lgl) like, C-terminal	Repeat	Interproscan
PF08366 all species →	LLGL	LLGL2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013905 all species →	Domain	Lethal giant larvae (Lgl)-like, C-terminal domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR013577 all species →	Domain	Lethal giant larvae homologue 2	Interproscan
IPR000664 all species →	Family	Lethal(2) giant larvae protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10241 all species →	LETHAL 2 GIANT LARVAE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008593 all species →	Biological Process	regulation of Notch signaling pathway	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0032878 all species →	Biological Process	regulation of establishment or maintenance of cell polarity	Interproscan
GO:0045159 all species →	Molecular Function	myosin II binding	Interproscan
GO:0050708 all species →	Biological Process	regulation of protein secretion	Interproscan
GO:0051294 all species →	Biological Process	establishment of spindle orientation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06094	LLGL; lethal(2) giant larvae protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.