Gene detail

Detailed information of ANN19772-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:42747875...42754635
NR annotation: CAH3143479.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RA17	Ribosomal RNA-processing protein 7 homolog A OS=Pongo abelii OX=9601 GN=RRP7A PE=2 SV=1
Q9D1C9	Ribosomal RNA-processing protein 7 homolog A OS=Mus musculus OX=10090 GN=Rrp7a PE=2 SV=1
Q9Y3A4	Ribosomal RNA-processing protein 7 homolog A OS=Homo sapiens OX=9606 GN=RRP7A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006344 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17799 all species →	RRM_Rrp7	Rrp7 RRM-like N-terminal domain	Domain	Interproscan
PF12923 all species →	RRP7	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040446 all species →	Family	Ribosomal RNA-processing protein 7	Interproscan
IPR040447 all species →	Domain	Rrp7, RRM-like N-terminal domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR024326 all species →	Domain	Ribosomal RNA-processing protein 7, C-terminal domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR034890 all species →	Domain	Rrp7A, RNA recognition motif	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13191 all species →	RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0032545 all species →	Cellular Component	CURI complex	Interproscan
GO:0034456 all species →	Cellular Component	UTP-C complex	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14545	RRP7; ribosomal RNA-processing protein 7	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.