Gene detail

Detailed information of ANN20007-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:1330758...1355012
NR annotation: CAH3128175.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN20007-RA

ATGCCTGAGGTTCAAGCGAAGGCTAAAAATGCCAGTTCTGGGGGTGGGAGTAAGCAGGGTGCTTTCAAGGACAAGGACAAGCCCACTGAGATTCGCATGAGCAACATTACTGCAGCTAAAGCTGTAGCTGATGCCATAAGAACAAGTCTTGGGCCAAAAGGGATGGACAAAATGATTCAAAGCGGAAATGGTGATGTGACTATCACTAATGATGGAGCGACAATCTTGAAACAAATGCAAGTATTGCACCCAGCAGCAAGGATGCTTGTAGAACTCTCTAAAGCCCAAGATATTGAGGCTGGAGATGGTACCACTACCGTTGTTGTAATCGCTGGAAGCTTACTCAGTGCAAGTGCTAAACTTCTGGAAAAAGGAATCCATCCTACCACCATATCAGAATCCTTTGAAAAGGCAGCTGCCAAAGCAGTGGAGATACTGACCAATATGTCCACCCCAGTTGCTCTGAGTGATCGAGAATCTCTGCTAAAAAGTGCAATGACATCTCTTAGTTCCAAGGTTGTTTCACAGTATTCAAATCTTCTGGCTCCAATCACTGTTGATGCTGTTCTTAGAGTCATTGATCCTTCCACGGCAGACAATGTTAATCTTAAAGATATCAGAGTTGTTCAAAAGCTGGGAGGCACTGTTGATGATACCGAACTGATTGAGGGTCTTGTTCTAGAACAAAAAATCAGCCATTTAGCTGGAGGAATATCTCAAGTGGAAAAAGCCAAAATTGGACTCATACAATTCTGCATCTCACCTCCAAAGACAGATATGGAAAACCAAGTAGTTGTTAGCGATTATACTCAGATGGACAGAGTATTGAAAGAAGAGCGCCAGTACATTCTTGATATCTGTAAGAAAATAAAAAAGGCTGGATGCAATGTGTTGCTCATTCAGAAGTCAATTTTAAGAGATGCCGTCAGTGACTTAGCTCTTCACTTTTTAAACAAAATGAAGATACTTGTTGTTAGAGACATCGAAAGAGATGAAATTGAATTCATATGCAAGAGCTTAGGCTGCAAACCCATTGCCAGTTTAGATCACTTCACTCCAGAGATGATGGCGACTGCAGAGCTTGTTGAGGAAGTTCCACTGGGAACAAGCAAAGTCGTCAAGGTGACCGGTATAACATCGCCAGGCCGCACTGTCAGCATCTTGGTGCGAGGGTCAAACAAGCTTGTGCTGGAGGAAGCAGAGCGATCTCTTCATGATGCTCTTTGTGTCGTCAGATGTTTGGTTAAAAAGAGAGCTCTCATAGCAGGCGGAGGGGCCCCTGAGATTGAAGTGTCCATCAAGCTAGCTGAGCATGCACGCACATTAACAGGAATGGAAGCATACTGTGTGCGTGCATTTGCTGAAGCATTGGAGATTATTCCTTACACTCTCGCAGAGAATGCTGGTCTGAATCCTATTGCTACTGTCACTGAACTGCGCAACAGACATGCCAAGGGCGAGACCACAGCCGGGATAAATGTCCGAAAGGGAACCATCACCAATATTCTGGAAGAGAATGTTCTCCAGCCCCTGTTAGTTTCCACAAGTGCTATCCAGCTAGCGTCTGAGACAGTGCGCAGTATTCTCAAGATCGACGATATTGTAAATACAAGCATCGACGAAGATTACATCTGTCAGATATGTCACCTACCACTTAAGCAAGCTGTTCTCACAAGATGTGGCCATAGGTTTTGTAATGAGTGCCTCTGTGAATCTTTCAGGAGGAGACAAGATCCTGAATGCCCTTGTGACAGAGAAAGGCTTGACAAAGACAAGGACATTTTTCCAGACAAAGCAAGTGAAAGAAGAATTCTTTCATACATGGTCAGATGCCCTTGTTCTGGCTGTCAATGGACCGGAGAACTCCGTGATGTTGAGGCACATGAAGAGAGATGTTCTTATAAAGTTGTTGAATGTCCAAGCCAACATTGCAATGTTAAACTGGCCAGGAGACTGGTGGAGGAACATTTAGCGACATCCTGTCCTTGGAGAATTGTTTGTTGTCCATTCTGCAGTGAAAGTCATCCAAAGTCACAGGAACATGTGCACAACCAAAGCTGTCCCATGTTTCCCCTTAATTGTATCAATGGATGTGAGCAGGTCATCCCAAGAGTACAGATGCCAGGTCATTTAGAAGTAGACTGTGTCCTGACGCCTCTGGCATGTCCTTATCATGAACTCGGCTGCACTACCAAGGTGGAAAGGCGAGACCTGGAGAGACACATCCATGATCATACCACATCACACCTCAGTTTAGCGTGCAAAAAACTCGTTCATCTTCACCAGGAATTTGATCAAGAAAAGACAAAGCTCGGGAAACAGATTGATGACCTGAAGAAATTAAACGACAGCCTTCTTCTGAAGGTTTCTTCGCAAGAGAAGGAAATATTAAAGACAAAAATAGAATCGCCGACGTTTGTGTGGAGGATAAGTGGATTTAACGAAATCTTGCGTCAGGCAAAACACGGGAAGAACAAAATCGACAGCGCGCCATTTTACACAGGACCGTACGGTTACAAACTGAAACTCTCCGTGAATCCTAATGGAGACGGATCTGGAAAGAACACGCATCTATCCGCGTTTGTTATCGTCATGAGAGGTGAATATGACGGCATGTTAGCCTGGCCTTTTCATCAGAAGGTGACATTTTCGCTTGTTGATCAACAGGATAATGTGGAGCAACGTGAAAACATTGTGATGCACTTCAGAGCGAACACTAAATTGGAGAATTTTGCGCGGCCGGTGTCAGATGAGAATCCTGGGCGGGGATACGCAAGGTTTGTGTCACATGAGAAGCTCAAGAGCAGGCGCTTCATTGTGGATGATACTTTGTTTATTCAAGTGGATGTTGGTCCGCCATCATCTTGA

Transcript

ANN20007-RA

Protein

Uniprot

Uniprot term	Description
P50991	T-complex protein 1 subunit delta OS=Homo sapiens OX=9606 GN=CCT4 PE=1 SV=4
Q5R637	T-complex protein 1 subunit delta OS=Pongo abelii OX=9601 GN=CCT4 PE=2 SV=3
Q7TPB1	T-complex protein 1 subunit delta OS=Rattus norvegicus OX=10116 GN=Cct4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR002194	Conserved_site	Chaperonin TCP-1, conserved site	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR017998	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR012717	Family	T-complex protein 1, delta subunit	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR053374	Family	TCP-1 chaperonin-containing T-complex	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11353	CHAPERONIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005832	Cellular Component	chaperonin-containing T-complex	Interproscan