Gene detail

Detailed information of ANN20134-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:3480215...3500081
NR annotation: PFX32736.1, Poly(A) polymerase type 3 [Stylophora pistillata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN20134-RA

ATGAGCAACAGCAACAACATATTTTATTATGAAAATAATGAAAAGGATTCCACTAACCTGCAGGACATAAAATTAACAAAAGACCTTGAAGATGCACTCAAACCTTATGGAGTATTTGAAAGTGAAGAAGAACTTCAACACAGGATGGTTGTCCTCGCAAAACTTAATACTTTGGTTAAGCAGTGGATTATTGATATCAGTTTGTCAAAGAATATGCCAGAATCTGTAGCGAACTCAGTAGGTGGAAAGATTTTTACGTTTGGTTCATACAGGCTTGGTGTGCACACCAAAGGTGCTGATATTGATACACTTCTTGTGGCACCTCGCCATGTCGATCGTTCTGACTTCTTTGGAACATTTTATGAGATTCTCAAGAATAATGAGGACGTCAAAGAATTAAGGGCAGTTGAAAATGCATTTGTTCCTGTCATCAAAATGGTGTTTTGCAACATAGAGATGGACTTGCTGTTTGCAAGATTAGCTCTCCCTGAGGTGCCAGATGACTTGAGTCTTTTGGATGAGGGCCTTCTTAAAAACTTGGACCCCAAATGTGTCAGAAGTTTAAATGGTTGTCGTGTAACAGATGAAATACTACACTTAGTTCCCAACATAGAAAACTTTCGGCTAACATTAAGAGCAGTCAAATTGTGGGCAAAAAAGCGTGGAATCTACTCCAATGTTCTGGGCTTTCTTGGTGGCGTATCGTGGGCCATGTTAGTGGCTCGTACATGTCAGCTGTATCCTAATGCCGTGGCATGTACTCTTCTCCAAAAATTCTTCCTTGTGTTTTCAAAATGGGAGTGGCCAAATCCAGTTTTGCTGAAAAATATTACTCTACCCGGTGATAGCAAACTGGGACTTAATTTCCCAGTCTGGGACCCAAGGACAAATCCATCCGACCGATATCACTTGATGCCTATTATAACACCAGCTTACCCCCAGCAGAACTCAACATTCAATGTGTCCATGTCAACAAGAACTATTATGAAAGAAGAATTTGACGTTGGCCTAGAAATTACAAGTAACGCATTGATTGGCAAGTCAACCTGGGATGCGCTGTTTCAACCGCCCAACTTCTTTAGCAAATACAAGTACTTGATCTCTCCTTGTTTTGTGTGTCTGAATGTGACTTTAAGTCGGCCATGCTCTGGCTTGTACATGTACATGTATCATACCAGCTCATCATTTATGGGTGGTGAATTCTGTTCTCCACATTTCAGACATTTTATTGTGTTAAGCGCCATATCAAACAGCGAAGAGGATCACCTTGAGTGGATTGGTTTGGTTGAGTCCAAGGTCAGAATACTAACGACAAACCTAGAGAACACACAGTATGTCTCACTAGCTCATGTCAGTCCAAAGTCCTTTCCTGCCTTAGAACCAGACAAGAATTCACCAACTACCAGATGGTTTATTGGACTGCAGTTTGAGAAAAAAGAAAATGTGAACATAGATTTGACAGGAGCTATTCAAATGTTTACAAATACTGTTCATAATCAAGCTCAAGCAGCCAAAATGTTCAAAGAGGGTATGAGAACAGAAGCAAAACATGTGAAAAAAAAGCAACTCAGTGAGTATTTACCACCAAATGTCCTGAAACAAAAAAAGAAAAGTTCTGTGGTGCCATCTGAAGTTAAAAAAGAGACTGTTGCCATAGTGACAGGTAAAGCAGATAACAAAGCTGATGTGTCCCTTGATTCAACGCTTAACGCCAGCGATTTGAGTCTGGAGATTACAACAGATGGTGTGGGAAGCAGTGAAAACAGTGAAGAAACAGGTACAATGTACATGTACGGCAAGGAACATGCTCTTCATAATGCTGAGATAATGCTAGGGAGGCAGTGTAGCCAAGTGATTAGGGTGTCGAACTTGCACTCCAGAGGTCGTGGTCCCAGGTTGAACTCCCACTCTGGGCTGAGTTGCTCGAAGTATGCTGTTGTTAGTAGTTCAGATGACAAAAAAGTGAGTTCTGTTGGCACTCCAGCATCATCAGTGTCAACAGTTGGTGAAGTGACCTCGTCAGATACAACTGTGGTTCCAGGTCAACCATCATCACCTTCCCAAGACAAGCCCACAGGATCAAAGCGACCAGGATCTCCTGTAGAATCTGAAAAGGCCAGCAAGAAACCTCGTATGGATGATGATGAAGTCGTGCCGGTCAGTTCTATGAATTCATTCAATGGCGAAGGTGGAAAGAAAAGGCCGAGTACTGCTGCTACTGCGGCGGATGATATCCCACAGAAAAAGATGAAGATGGATCCCAACAAAACGGCTGGAGAATCGTCAAATCCAGAAGGCACGTTAGGTGTTGTGGGAGGAACACAAACTGAGGTTAGAGACCAAGAAACATGCGAACTGGGAAACCCCACAGGATCACCAGGAAGTGAGAACGGCGCAAAAACAAATACAGAGAAGCCCGAGGAGTCTAAAGGAGCCGTCAAACGATCAATATCCCCGAGTAACGAGGAGAAGTTGAAACAGGATCAAGTTAATACGACTGGGGAGCCTGAAAAAGAGCTGATCGATGAAGGCCCCCCACCAGCAAGCCAGATCCCGGTGGTCAAAAATATCAAGATCAAGCTTAAGTAA

Transcript

ANN20134-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BWT3	Poly(A) polymerase gamma OS=Homo sapiens OX=9606 GN=PAPOLG PE=1 SV=2
P25500	Poly(A) polymerase alpha OS=Bos taurus OX=9913 GN=PAPOLA PE=1 SV=3
P51003	Poly(A) polymerase alpha OS=Homo sapiens OX=9606 GN=PAPOLA PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001969 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04928 all species →	PAP_central	Poly(A) polymerase central domain	Domain	Interproscan
PF04926 all species →	PAP_RNA-bind	Poly(A) polymerase predicted RNA binding domain	Domain	Interproscan
PF20750 all species →	PAP_NTPase	Poly(A) polymerase nucleotidyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR007012 all species →	Domain	Poly(A) polymerase, central domain	Interproscan
IPR007010 all species →	Domain	Poly(A) polymerase, RNA-binding domain	Interproscan
IPR011068 all species →	Homologous_superfamily	Nucleotidyltransferase, class I-like, C-terminal	Interproscan
IPR048840 all species →	Domain	Poly(A) polymerase, nucleotidyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10682 all species →	POLY A POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:1990817 all species →	Molecular Function	poly(A) RNA polymerase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004652 all species →	Molecular Function	obsolete polynucleotide adenylyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14376	PAP; poly(A) polymerase	EC:2.7.7.19	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.