Gene detail

Detailed information of ANN20245-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:5581521...5587991
NR annotation: CAH3111945.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN20245-RA

ATGAGACGAACGATGGATACATCATGGAATGTTCGTTGGTTGTTTGCGTTGTTTTTCTGGATTTTTTTCGTGTTTCATAAAGCCAAAGCAGAGACATTCATAAACGAACAAACTTCGTTCCTTCAGCTGAAGAAATGGGACAGCTCCGAAAGCCGAGGACTTGGCTTTCGCTTCAAAACCTTTCTGTCCGATGCGCTTCTATTGTACATGGATGACGAAGGGAAATCAAATTTCTTGCGCGTTGAGCTGTTTCAAGGCAAGCTACGTCTGACTTGCAGTTATGGCGCGCGATTCGGGGCAATGGCGGTGGAAATCGGCGATGATCTCAACGATTTATTATGGCATCGGGTGCTGTTAGAGAGGAGCAGGGGCAAAACAACAATCTCTTTGGACAGTCAGTCGAAGTCAACTGTCAACAGCCATGAGAACACGAATTTAAACATTGAAAGCTCAATGTACTTTGGCGGAATTCCTACTGCACGGCTTGCTGCGAACAGTGTTACTCAACCATCCGTCCTACTTCTGCATAGATTTGTAGGGTGCATAACAGATATTGACATGTTTGAGTACTCCGCGAGACAAGGAAAAAGGAGAAGCGCGGTCGTGGAGAATTCGACGGAAATTATTCCCGGATGCACTGATATGTGCGAAATCGATAACAAGTGCCAGAACAATGGGATGTGTTTGAACAGATTTACTACTAGCGAGTGTGACTGCACGGCAACTGGGTTCAGTGGAAAGACCTGTAAAGAAGCACGCCCTGTTCTGGGCCTCAGCCAGGCAGATTACGTGATTTTCAACCGCTCATACGAAGACATTTCATCGCGGCAGGATCGGATTGTTTTCCGATTCAAGACAGCCAATCAGAATGGCTCAATACTGGAAAGCGGTCTCGGATATGACTATTTAGTGATTGAACTGTACCGAGGTTTTCTTCTCGTACGCTGGAATCTTGGATCAGGTGAAATCTACGTGCACGTGCGTGATAAAGCGTGCGATGATGACAAGTGGCATTCGGTTGATATTACTAGGAACCAGGTCCAACTCGACTTGACACTCGATGGTGTTTTCCACGTGTCAAGAAGATTTCCCGGGAGATTTATTTCCTTTGATTTAAAGAAAAGTGAAGGGGATGTTTTCATAGGCGGAATGTTGACAAATACGTTCACTTCGAAAACTCGCTCGTCGGGGGCAAGTTTTGATGGATGTCTTCAGGAGATCAATTTTAACGGGGTGGATATTGTCCAAGGAGTTGCAAATGGAGAAGAGGTTTTCATAACCAAAGGTCGTCCAAGGTTGACTTGTGAAATTTTAAACGACCCGGATCCAACAACTTCAATGTCAGTAACGTCCAGTCCTCCACCAGTTACCACGGACAAAACGACCGCGGAGCAATCAACTACACCTGTGACAAGCACGGAGAAGGAGGAGCTTCCTACTTCATATATCACCACACCAATGACAACCTCAGAAGATTATACCTTTGGCAGTCAACAAGTCCTTACGCCGCATGCGCAGAGTTTTTCGGGAAATTCAGTGATACCCTGCGTCGATGACGAAGATGACTGTGATTCCGAGGATTCTGGTTCTGGGAGTGACGAAGATGCCTCGGGTACAAATCGTCAGTCGTCGGGAGACAAGGACACGTCTTCAAGTTCTTCTAAGGAGAAGATTGTCAAAATACCAGATATTATAGACAACAATAGTGTTAAGAAACCTTTAAAACCGATTCCGTCAAAAGATCCCTTGTTGGAAACCGATAATGAGCTCATCGGCGAACCCGACATTTCCCGAACAAACTGCATCCAAGATGACGAAGATGGCTGCAACAGCGAGGATGAATCTGGTCAGAGTTCCACTGAAATCGGATCTGGAAGAAGTGCGTTACCGACCGCTGCACCCTCGCCAGTTAACGACGGTGGTGTCAATTATGCCAAGAAAACTGTACGCGTGAGGAAAGGTAGTGCTAAAAAATGGGCACTCATAGCCGGCATTATTGTGGTAGGAACTCTGCTAGTGGCGTTTTGTATCTTTGCTATTTGGTGGCTGTATAAGCATAAGAATGATCCTTATTGGAACGGAAGTTACAAAGGCAGCAAAGAAAGATGCCTGCAATCAGAAGTAACGGAAGTGTAA

Transcript

ANN20245-RA

Protein

Uniprot

Uniprot term	Description
Q9CS84	Neurexin-1 OS=Mus musculus OX=10090 GN=Nrxn1 PE=1 SV=3
Q28146	Neurexin-1 OS=Bos taurus OX=9913 GN=NRXN1 PE=1 SV=1
Q9ULB1	Neurexin-1 OS=Homo sapiens OX=9606 GN=NRXN1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001791	Domain	Laminin G domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR050372	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15036	PIKACHURIN-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07377	NRXN; neurexin	-	Membrane trafficking	ko04131	deepkoala