Detailed information of ANN20286-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:6461620...6489955
NR annotation: CAH3111886.1, unnamed protein product, partial [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004293 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02198
all species →
SAM_PNTSterile alpha motif (SAM)/Pointed domainDomainInterproscan
PF04326
all species →
SLFN_AlbA_2Schlafen, AlbA_2DomainInterproscan
PF00313
all species →
CSD'Cold-shock' DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029071
all species →
Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR013761
all species →
Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR003118
all species →
DomainPointed domainInterproscan
IPR012340
all species →
Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR000626
all species →
DomainUbiquitin-like domainInterproscan
IPR038461
all species →
Homologous_superfamilySchlafen, AlbA_2 domain superfamilyInterproscan
IPR007421
all species →
DomainSchlafen, AlbA_2 domainInterproscan
IPR002059
all species →
DomainCold-shock protein, DNA-bindingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16155
all species →
DED DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043565
all species →
Molecular Functionsequence-specific DNA bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN20286-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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