Gene detail

Detailed information of ANN20291-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:6583335...6603519
NR annotation: CAH3026910.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN20291-RA

ATGCAGTTACCGTTATATAGGAGATGGAGCTTTTTTGCCGGAGTTACTGATAACAATACGTTTACGGAACACAGCGCCACACTGCTGTTTTATCTTCATAATAAACATTTTAAAATAAGTCTCTTTCTACGGGTTCAGCGAGGCAAGGTTGAAAAACATCTTCAATCTGATATGAGACTGCACCTTGACTTGGCTTGTGTAAAGTTGCATAAAACAGAAGTTCTCTTCAGAGAGACCACAAAAAAACTTGAAGAGAAGATCAGTGCTCTTGAAAATAAACCCTTACAATGTCAGGACGTCTATACGTGGAAGATCAGTGGCTTCAGTGAAAAAAACACCACCGGAAGCAAAATTCACAGTGCTCCATTCTACACGGGAGAAAATGGCTATAAAGTCAGATTACGTCTGTATCCAAATGGCGTTGGTTCTGGGAAAAACACTCACCTTTCGTTATTCTTAATGGTAATGAAAGGCGAGTACGATCCCATTTTACCCTGGCCGTTTCATAAAAAGGTGACTTTTATATTGATCGATCAAAGTGAAAATGTATGTGACAGGCAGGACATTGTTAAGTCTATAACAACGGACCCTGAAGATTTGAAGTGTAACGCAAGGCCTAAGACAGAGGAAAACCAAGGGAGGGGGTTTCCTCGATTTGCGTCAAATGTAAACGACGAACTGGTGGAAGAGGGGTACATTGTGGATGACACCATGTTTATTCAGTTGGCATTGGTCAGACTTGCAAGATTGCTGAGCAATGATGGGATACCTACTCCATTGGGTTTAAAGTTTTACTGCGTGTGTGAAGCTATGTTCATACTACATGGAATAGATTTTGCGATGATATACGAGATACGAGTCAACACTAACAGATACAACATAGATTTTTCAGGACGCTGGATGAAAAGCATGGCGGAAGCTCAAGCAAATTCTGCACTTGGTGGATACGATGAGGATTTTGTAGATGTTGTAGAAGACGAATGGAACTGTCCAATCTGTCAGTTACCTTTAAAAGAGGCCGTCCAAACGGGAGTATGCGGCCATCGATTTTGCTGGCAATGTCTTGACGGACACTTCAAAAGACAGGAGCGCGATGGAGAACCATTAACTTGTCCTGTGGACCGAAACAATCTGACACGAGAGAAAGACATGTTCCTAGACAAAGCAACCGAAAGAAAGATTCGTTCTTTTATTACCAAATGCCCAAGCAGAGGCTGTCATTGGACTGGTGAACTGAGGTCAAAAGATGGCCATTTGGTATCTTGTTCTTTTAAACTAGTATCCTGTACAAATAACAATTGTCACGTGGCACTGCCCAGGACATTCATGCAAGATCACGTTACAAAAACGTGCCAATGGAGGATTATTCACTGTGATCATTGCAACGCGTCACATCCATTTTGTAAAACTGAGGCTCATCACAATGGATGTAAGAGATTTCCACTAGCCTGTCCAAACAGATGTGGAGCCATCAGCATTCCGAGAGAGGAGATTTCTGCCCACATTGAGGAGGACTGTATGACGGCAATAATTTCCTGCCCCTATGCTGACATGGGCTGTATCGAAAAGGTTCAGCGAGGCAAGGTTGAATCACATCTTCAATCTGATATGAGACTGCACCTTGACTTGGCTTGTGTAAAGTTGCATAAAACAGAAGTTCTATTCAGAGAGACCACAAAAAAACTGGAAGAGAAGATCAGTGCTCTTGAAAATAAACCCGTATTTACGTGGAAGATCAGAGGCTTCAGTGAAATCTTGATGAAAACCCCAGCTGGAACCAAAATACCCAGTGATCCATTCTACACGGGAGAAAATGGCTACAAAGCTAGATTACGTCTGTATCCAAAGAGTGCTGCATCAGGAAAAAACAATTACCTTTCGTTATACCTAGTTCTGATGAAAGGCGAATACGATCCCATTCTACCCTGGCCGTTTCATAAAAAGCTGATTTTTATATTGATTGATCAAAATGAAAATTTAAACGATAGGGACGACATTGTTAAGTCTATAACAACAGACCCTGAAAATTTACTGTGTAACGCAAGGCCTAAGATAGAGGAAAACCAGGGTGCGAAGGGCTCTCCAAGATTTGTGTCACATGACGAGATTAAGGAAAAACGCTACATTGTGGATGATACTATCTTCATTCAGCCAAACGATACTCTTAAAACTCGTCTTGAATACGAGATCAAGTAA

Transcript

ANN20291-RA

Protein

Uniprot

Uniprot term	Description
Q9Y4K3	TNF receptor-associated factor 6 OS=Homo sapiens OX=9606 GN=TRAF6 PE=1 SV=1
P70196	TNF receptor-associated factor 6 OS=Mus musculus OX=10090 GN=Traf6 PE=1 SV=2
B5DF45	TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09848	TRAF4; TNF receptor-associated factor 4	-	Small cell lung cancer	ko05222	deepkoala