Genomic Location: Scaffold_4__1_contigs__length_45231618:15391652...15393991
NR annotation: CAH3181951.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN20696-RA |
| Transcript |
| ANN20696-RA |
| Protein |
| ANN20696-RA |
| UniProt accession | Description |
|---|---|
| Q9H8W5 | E3 ubiquitin-protein ligase TRIM45 OS=Homo sapiens OX=9606 GN=TRIM45 PE=1 SV=2 |
| E7FAM5 | E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio OX=7955 GN=trim71 PE=1 SV=1 |
| Q810I1 | E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus OX=10116 GN=Trim50 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004791 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01436 all species → | NHL | NHL repeat | Repeat | Interproscan |
| PF00630 all species → | Filamin | Filamin/ABP280 repeat | Domain | Interproscan |
| PF08450 all species → | SGL | SMP-30/Gluconolactonase/LRE-like region | Repeat | Interproscan |
| PF13445 all species → | zf-RING_UBOX | RING-type zinc-finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR001258 all species → | Repeat | NHL repeat | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR017907 all species → | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR001298 all species → | Repeat | Filamin/ABP280 repeat | Interproscan |
| IPR017868 all species → | Repeat | Filamin/ABP280 repeat-like | Interproscan |
| IPR000315 all species → | Domain | B-box-type zinc finger | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR003649 all species → | Domain | B-box, C-terminal | Interproscan |
| IPR013658 all species → | Domain | SMP-30/Gluconolactonase/LRE-like region | Interproscan |
| IPR027370 all species → | Domain | Zinc finger, RING-type, eukaryotic | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR011042 all species → | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| IPR047153 all species → | Family | TRIM45/56/19 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR25462 all species → | BONUS, ISOFORM C-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
ANN20696-RA.
