Gene detail

Detailed information of ANN20719-RA in Montipora grisea

Genomic Location: Scaffold_19__1_contigs__length_4594208:81953...83317
NR annotation: WP_086488101.1, DNA repair protein RadA [Thioflexithrix psekupsensis]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P96963	DNA repair protein RadA OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=radA PE=3 SV=2
P45266	DNA repair protein RadA OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=radA PE=3 SV=1
P24517	DNA repair protein RadA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=radA PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013893 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18073 all species →	Rubredoxin_2	Rubredoxin metal binding domain	Domain	Interproscan
PF13541 all species →	ChlI	Subunit ChlI of Mg-chelatase	Domain	Interproscan
PF13481 all species →	AAA_25	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041166 all species →	Domain	LapB, rubredoxin metal binding domain	Interproscan
IPR004504 all species →	Family	DNA repair protein RadA	Interproscan
IPR020588 all species →	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32472 all species →	DNA REPAIR PROTEIN RADA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000725 all species →	Biological Process	recombinational repair	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04485	radA, sms; DNA repair protein RadA/Sms	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.