Gene detail

Detailed information of ANN20731-RA in Montipora grisea

Genomic Location: Scaffold_19__1_contigs__length_4594208:226509...228362
NR annotation: BAP56205.1, RNA polymerase sigma 70 [Thioploca ingrica]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26480	RNA polymerase sigma factor RpoD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rpoD PE=1 SV=1
P52326	RNA polymerase sigma factor RpoD OS=Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0) OX=1124983 GN=rpoD PE=3 SV=1
P0A2E4	RNA polymerase sigma factor RpoD OS=Salmonella typhi OX=90370 GN=rpoD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013438 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04546 all species →	Sigma70_ner	Sigma-70, non-essential region	Domain	Interproscan
PF04542 all species →	Sigma70_r2	Sigma-70 region 2	Domain	Interproscan
PF03979 all species →	Sigma70_r1_1	Sigma-70 factor, region 1.1	Family	Interproscan
PF04539 all species →	Sigma70_r3	Sigma-70 region 3	Family	Interproscan
PF04545 all species →	Sigma70_r4	Sigma-70, region 4	Domain	Interproscan
PF00140 all species →	Sigma70_r1_2	Sigma-70 factor, region 1.2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028630 all species →	Family	RNA polymerase sigma factor RpoD	Interproscan
IPR000943 all species →	Domain	RNA polymerase sigma-70	Interproscan
IPR012760 all species →	Domain	RNA polymerase sigma factor RpoD, C-terminal	Interproscan
IPR050239 all species →	Family	Sigma-70 factor family, RNA polymerase initiation factors	Interproscan
IPR007631 all species →	Domain	RNA polymerase sigma factor 70, non-essential domain	Interproscan
IPR007627 all species →	Domain	RNA polymerase sigma-70 region 2	Interproscan
IPR042189 all species →	Homologous_superfamily	Sigma-70 factor, region 1.1 superfamily	Interproscan
IPR007127 all species →	Domain	RNA polymerase sigma factor 70, region 1.1	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR007624 all species →	Domain	RNA polymerase sigma-70 region 3	Interproscan
IPR014284 all species →	Domain	RNA polymerase sigma-70 like domain	Interproscan
IPR013324 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 3/4-like	Interproscan
IPR007630 all species →	Domain	RNA polymerase sigma-70 region 4	Interproscan
IPR013325 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 2	Interproscan
IPR009042 all species →	Domain	RNA polymerase sigma-70 region 1.2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30603 all species →	RNA POLYMERASE SIGMA FACTOR RPO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0016987 all species →	Molecular Function	sigma factor activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03086	rpoD; RNA polymerase primary sigma factor	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.