Genomic Location: Scaffold_19__1_contigs__length_4594208:517625...518572
NR annotation: WP_002683493.1, 23S rRNA pseudouridine(955/2504/2580) synthase RluC [Beggiatoa alba]
| CDS | |||||
| ANN20756-RA | |||||
| Transcript |
| ANN20756-RA |
| Protein |
| ANN20756-RA |
| Uniprot term | Description |
|---|---|
| Q8ZFU1 | Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis OX=632 GN=rluC PE=3 SV=1 |
| Q9HZM9 | Ribosomal large subunit pseudouridine synthase C OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rluC PE=3 SV=1 |
| Q8Z7J7 | Ribosomal large subunit pseudouridine synthase C OS=Salmonella typhi OX=90370 GN=rluC PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00849 | PseudoU_synth_2 | RNA pseudouridylate synthase | Family | Interproscan |
| PF01479 | S4 | S4 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006224 | Conserved_site | Pseudouridine synthase, RluA-like, conserved site | Interproscan |
| IPR006225 | Family | Pseudouridine synthase, RluC/RluD | Interproscan |
| IPR006145 | Domain | Pseudouridine synthase, RsuA/RluA-like | Interproscan |
| IPR002942 | Domain | RNA-binding S4 domain | Interproscan |
| IPR020103 | Homologous_superfamily | Pseudouridine synthase, catalytic domain superfamily | Interproscan |
| IPR050188 | Family | RluA Pseudouridine Synthase | Interproscan |
| IPR036986 | Homologous_superfamily | RNA-binding S4 domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21600 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0001522 | Biological Process | pseudouridine synthesis | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0009451 | Biological Process | RNA modification | Interproscan |
| GO:0009982 | Molecular Function | pseudouridine synthase activity | Interproscan |
| GO:0000455 | Biological Process | enzyme-directed rRNA pseudouridine synthesis | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06179 | rluC; 23S rRNA pseudouridine955/2504/2580 synthase | EC:5.4.99.24 | Ribosome biogenesis | ko03009 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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