Genomic Location: Scaffold_19__1_contigs__length_4594208:688272...690268
NR annotation: BAP55687.1, peptide ABC transporter substrate-binding protein [Thioploca ingrica]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN20765-RA |
| Transcript |
| ANN20765-RA |
| Protein |
| ANN20765-RA |
| UniProt accession | Description |
|---|---|
| P33913 | Uncharacterized protein YejA OS=Escherichia coli (strain K12) OX=83333 GN=yejA PE=1 SV=3 |
| P55691 | Uncharacterized protein y4wM OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a00920 PE=3 SV=1 |
| Q8FW84 | Putative binding protein BRA0576/BS1330_II0571 OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=BRA0576 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0018185 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00496 all species → | SBP_bac_5 | Bacterial extracellular solute-binding proteins, family 5 Middle | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000914 all species → | Domain | Solute-binding protein family 5 domain | Interproscan |
| IPR030678 all species → | Family | Peptide/nickel binding protein, MppA-type | Interproscan |
| IPR039424 all species → | Family | Solute-binding protein family 5 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30290 all species → | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0043190 all species → | Cellular Component | ATP-binding cassette (ABC) transporter complex | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0015833 all species → | Biological Process | peptide transport | Interproscan |
| GO:0030288 all species → | Cellular Component | outer membrane-bounded periplasmic space | Interproscan |
| GO:0042884 all species → | Biological Process | microcin transport | Interproscan |
| GO:1904680 all species → | Molecular Function | peptide transmembrane transporter activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13893 | yejA; microcin C transport system substrate-binding protein | - | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
