Genomic Location: Scaffold_19__1_contigs__length_4594208:694212...695042
NR annotation: OZB35330.1, MAG: hypothetical protein B7X44_10265 [Halothiobacillus sp. 15-55-196]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN20766-RA |
| Transcript |
| ANN20766-RA |
| Protein |
| ANN20766-RA |
| UniProt accession | Description |
|---|---|
| Q5R0K5 | Small ribosomal subunit protein uS9 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=rpsI PE=3 SV=1 |
| A4XQQ4 | Small ribosomal subunit protein uS9 OS=Ectopseudomonas mendocina (strain ymp) OX=399739 GN=rpsI PE=3 SV=1 |
| B8F3F7 | Small ribosomal subunit protein uS9 OS=Glaesserella parasuis serovar 5 (strain SH0165) OX=557723 GN=rpsI PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004032 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00380 all species → | Ribosomal_S9 | Ribosomal protein S9/S16 | Family | Interproscan |
| PF00572 all species → | Ribosomal_L13 | Ribosomal protein L13 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000754 all species → | Family | Small ribosomal subunit protein uS9 | Interproscan |
| IPR005822 all species → | Family | Large ribosomal subunit protein uL13 | Interproscan |
| IPR023035 all species → | Family | Small ribosomal subunit protein uS9, bacterial/plastid | Interproscan |
| IPR036899 all species → | Homologous_superfamily | Large ribosomal subunit protein uL13 superfamily | Interproscan |
| IPR014721 all species → | Homologous_superfamily | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Interproscan |
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR020574 all species → | Conserved_site | Small ribosomal subunit protein uS9, conserved site | Interproscan |
| IPR005823 all species → | Family | Large ribosomal subunit protein uL13, bacterial-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21569 all species → | RIBOSOMAL PROTEIN S9 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0015935 all species → | Cellular Component | small ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02996 | RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9 | - | Ribosome | ko03011 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
