Genomic Location: Scaffold_19__1_contigs__length_4594208:1522432...1527159
NR annotation: HIE01939.1, NAD-glutamate dehydrogenase [Thiotrichaceae bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN20819-RA |
| Transcript |
| ANN20819-RA |
| Protein |
| ANN20819-RA |
| UniProt accession | Description |
|---|---|
| E1V4J5 | NAD-specific glutamate dehydrogenase OS=Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) OX=768066 GN=gdh PE=1 SV=1 |
| Q9HZE0 | NAD-specific glutamate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=gdhB PE=1 SV=1 |
| A0R1C2 | NAD-specific glutamate dehydrogenase OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=gdh PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0017361 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21078 all species → | GDH_HM3 | Glutamate dehydrogenase, helical motif 3 | Motif | Interproscan |
| PF21073 all species → | GDH_HM1 | Glutamate dehydrogenase, helical motif 1 | Motif | Interproscan |
| PF21077 all species → | GDH_ACT3 | Glutamate dehydrogenase, ACT3 domain | Domain | Interproscan |
| PF05088 all species → | Bac_GDH_CD | Bacterial NAD-glutamate dehydrogenase, catalytic domain | Domain | Interproscan |
| PF21076 all species → | GDH_ACT2 | Glutamate dehydrogenase, ACT2 domain | Domain | Interproscan |
| PF21075 all species → | GDH_ACT1 | Glutamate dehydrogenase, ACT1 domain | Domain | Interproscan |
| PF21074 all species → | GDH_C | Glutamate dehydrogenase, C-terminal | Domain | Interproscan |
| PF21079 all species → | GDH_HM2 | Glutamate dehydrogenase, helical motif 2 | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049056 all species → | Conserved_site | NAD-glutamate dehydrogenase, helical motif 3 | Interproscan |
| IPR049059 all species → | Conserved_site | NAD-glutamate dehydrogenase, helical motif 1 | Interproscan |
| IPR049064 all species → | Domain | NAD-glutamate dehydrogenase, ACT3 domain | Interproscan |
| IPR028971 all species → | Domain | NAD-glutamate dehydrogenase, catalytic domain | Interproscan |
| IPR049062 all species → | Domain | NAD-glutamate dehydrogenase, ACT2 domain | Interproscan |
| IPR007780 all species → | Family | NAD-glutamate dehydrogenase, bacteria | Interproscan |
| IPR024727 all species → | Domain | NAD-glutamate dehydrogenase, N-terminal ACT1 domain | Interproscan |
| IPR048381 all species → | Domain | NAD-specific glutamate dehydrogenase, C-terminal | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR049058 all species → | Conserved_site | NAD-glutamate dehydrogenase, helical motif 2 | Interproscan |
| IPR046346 all species → | Homologous_superfamily | Aminoacid dehydrogenase-like, N-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43403 all species → | NAD-SPECIFIC GLUTAMATE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004352 all species → | Molecular Function | glutamate dehydrogenase (NAD+) activity | Interproscan |
| GO:0019551 all species → | Biological Process | obsolete glutamate catabolic process to 2-oxoglutarate | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15371 | GDH2; glutamate dehydrogenase | EC:1.4.1.2 | Taurine and hypotaurine metabolism | ko00430 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
