Detailed information of ANN20896-RA in Montipora grisea

Genomic Location: Scaffold_19__1_contigs__length_4594208:2525730...2527076
NR annotation: BAP57141.1, phosphoglucosamine mutase [Thioploca ingrica]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3J826Phosphoglucosamine mutase OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=glmM PE=3 SV=1
A0KNE8Phosphoglucosamine mutase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=glmM PE=3 SV=1
Q607B4Phosphoglucosamine mutase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=glmM PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0013508 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02880
all species →
PGM_PMM_IIIPhosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain IIIDomainInterproscan
PF02879
all species →
PGM_PMM_IIPhosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain IIDomainInterproscan
PF02878
all species →
PGM_PMM_IPhosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain IDomainInterproscan
PF00408
all species →
PGM_PMM_IVPhosphoglucomutase/phosphomannomutase, C-terminal domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050060
all species →
FamilyPhosphoglucosamine mutaseInterproscan
IPR006352
all species →
FamilyPhosphoglucosamine mutase, bacterial typeInterproscan
IPR005846
all species →
DomainAlpha-D-phosphohexomutase, alpha/beta/alpha domain IIIInterproscan
IPR005845
all species →
DomainAlpha-D-phosphohexomutase, alpha/beta/alpha domain IIInterproscan
IPR016055
all species →
Homologous_superfamilyAlpha-D-phosphohexomutase, alpha/beta/alpha I/II/IIIInterproscan
IPR005844
all species →
DomainAlpha-D-phosphohexomutase, alpha/beta/alpha domain IInterproscan
IPR016066
all species →
Conserved_siteAlpha-D-phosphohexomutase, conserved siteInterproscan
IPR005843
all species →
DomainAlpha-D-phosphohexomutase, C-terminalInterproscan
IPR005841
all species →
FamilyAlpha-D-phosphohexomutase superfamilyInterproscan
IPR036900
all species →
Homologous_superfamilyAlpha-D-phosphohexomutase, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42946
all species →
PHOSPHOHEXOSE MUTASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004615
all species →
Molecular Functionphosphomannomutase activityInterproscan
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0006048
all species →
Biological ProcessUDP-N-acetylglucosamine biosynthetic processInterproscan
GO:0008966
all species →
Molecular Functionphosphoglucosamine mutase activityInterproscan
GO:0009252
all species →
Biological Processpeptidoglycan biosynthetic processInterproscan
GO:0000287
all species →
Molecular Functionmagnesium ion bindingInterproscan
GO:0005975
all species →
Biological Processcarbohydrate metabolic processInterproscan
GO:0016868
all species →
Molecular Functionintramolecular phosphotransferase activityInterproscan
GO:0071704
all species →
Biological Processobsolete organic substance metabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03431glmM; phosphoglucosamine mutaseEC:5.4.2.10
Amino sugar and nucleotide sugar metabolismko00520deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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