Genomic Location: Scaffold_19__1_contigs__length_4594208:2627130...2629907
NR annotation: MCK5523133.1, isoleucine--tRNA ligase [Thiomargarita sp.]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN20902-RA |
| Transcript |
| ANN20902-RA |
| Protein |
| ANN20902-RA |
| UniProt accession | Description |
|---|---|
| Q605M7 | Isoleucine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=ileS PE=3 SV=1 |
| B8GQR1 | Isoleucine--tRNA ligase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=ileS PE=3 SV=1 |
| Q0AAD1 | Isoleucine--tRNA ligase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=ileS PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002531 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00133 all species → | tRNA-synt_1 | tRNA synthetases class I (I, L, M and V) | Domain | Interproscan |
| PF06827 all species → | zf-FPG_IleRS | Zinc finger found in FPG and IleRS | Domain | Interproscan |
| PF08264 all species → | Anticodon_1 | Anticodon-binding domain of tRNA ligase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002301 all species → | Family | Isoleucine-tRNA ligase | Interproscan |
| IPR009008 all species → | Homologous_superfamily | Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR009080 all species → | Homologous_superfamily | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding | Interproscan |
| IPR001412 all species → | Conserved_site | Aminoacyl-tRNA synthetase, class I, conserved site | Interproscan |
| IPR002300 all species → | Domain | Aminoacyl-tRNA synthetase, class Ia | Interproscan |
| IPR023585 all species → | Family | Isoleucine-tRNA ligase, type 1 | Interproscan |
| IPR010663 all species → | Domain | Zinc finger, FPG/IleRS-type | Interproscan |
| IPR013155 all species → | Domain | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding | Interproscan |
| IPR033708 all species → | Domain | Isoleucyl tRNA synthetase type 1, anticodon-binding domain | Interproscan |
| IPR050081 all species → | Family | Isoleucine--tRNA ligase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42765 all species → | SOLEUCYL-TRNA SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004822 all species → | Molecular Function | isoleucine-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006428 all species → | Biological Process | isoleucyl-tRNA aminoacylation | Interproscan |
| GO:0002161 all species → | Molecular Function | aminoacyl-tRNA editing activity | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0000049 all species → | Molecular Function | tRNA binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01870 | IARS, ileS; isoleucyl-tRNA synthetase | EC:6.1.1.5 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
