Genomic Location: Scaffold_19__1_contigs__length_4594208:3483393...3485403
NR annotation: MCP4699609.1, polynucleotide adenylyltransferase PcnB [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN20967-RA |
| Transcript |
| ANN20967-RA |
| Protein |
| ANN20967-RA |
| UniProt accession | Description |
|---|---|
| P0ABF3 | Poly(A) polymerase I OS=Escherichia coli O157:H7 OX=83334 GN=pcnB PE=3 SV=2 |
| P0ABF2 | Poly(A) polymerase I OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=pcnB PE=3 SV=2 |
| P0ABF1 | Poly(A) polymerase I OS=Escherichia coli (strain K12) OX=83333 GN=pcnB PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011292 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12627 all species → | PolyA_pol_RNAbd | Probable RNA and SrmB- binding site of polymerase A | Domain | Interproscan |
| PF00475 all species → | IGPD | Imidazoleglycerol-phosphate dehydratase | Family | Interproscan |
| PF01743 all species → | PolyA_pol | Poly A polymerase head domain | Domain | Interproscan |
| PF12626 all species → | PolyA_pol_arg_C | Polymerase A arginine-rich C-terminus | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002646 all species → | Domain | Poly A polymerase, head domain | Interproscan |
| IPR032828 all species → | Domain | tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain | Interproscan |
| IPR000807 all species → | Family | Imidazoleglycerol-phosphate dehydratase | Interproscan |
| IPR020565 all species → | Conserved_site | Imidazoleglycerol-phosphate dehydratase, conserved site | Interproscan |
| IPR038494 all species → | Homologous_superfamily | Imidazole glycerol phosphate dehydratase domain superfamily | Interproscan |
| IPR025866 all species → | Domain | Polymerase A arginine-rich C-terminal domain | Interproscan |
| IPR010206 all species → | Family | Poly(A) polymerase I | Interproscan |
| IPR043519 all species → | Homologous_superfamily | Nucleotidyltransferase superfamily | Interproscan |
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR052191 all species → | Family | tRNA nucleotidyltransferase/poly(A) polymerase I | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43051 all species → | POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0016779 all species → | Molecular Function | nucleotidyltransferase activity | Interproscan |
| GO:0000105 all species → | Biological Process | L-histidine biosynthetic process | Interproscan |
| GO:0004424 all species → | Molecular Function | imidazoleglycerol-phosphate dehydratase activity | Interproscan |
| GO:0043633 all species → | Biological Process | polyadenylation-dependent RNA catabolic process | Interproscan |
| GO:1990817 all species → | Molecular Function | poly(A) RNA polymerase activity | Interproscan |
ANN20967-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
