Genomic Location: Scaffold_19__1_contigs__length_4594208:3588978...3589941
NR annotation: CAD7251940.1, unnamed protein product [Darwinula stevensoni]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN20975-RA |
| Transcript |
| ANN20975-RA |
| Protein |
| ANN20975-RA |
| UniProt accession | Description |
|---|---|
| Q1H4R0 | Phosphoribosyl-ATP pyrophosphatase OS=Methylobacillus flagellatus (strain ATCC 51484 / DSM 6875 / VKM B-1610 / KT) OX=265072 GN=hisE PE=3 SV=1 |
| Q603K5 | Phosphoribosyl-ATP pyrophosphatase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=hisE PE=3 SV=1 |
| Q0A5D4 | Phosphoribosyl-ATP pyrophosphatase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=hisE PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0033351 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11969 all species → | DcpS_C | Scavenger mRNA decapping enzyme C-term binding | Family | Interproscan |
| PF01503 all species → | PRA-PH | Phosphoribosyl-ATP pyrophosphohydrolase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036265 all species → | Homologous_superfamily | HIT-like superfamily | Interproscan |
| IPR011146 all species → | Domain | HIT-like domain | Interproscan |
| IPR008179 all species → | Family | Phosphoribosyl-ATP pyrophosphohydrolase | Interproscan |
| IPR001310 all species → | Family | Histidine triad (HIT) protein | Interproscan |
| IPR021130 all species → | Family | Phosphoribosyl-ATP pyrophosphohydrolase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23089 all species → | HISTIDINE TRIAD HIT PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0000105 all species → | Biological Process | L-histidine biosynthetic process | Interproscan |
| GO:0004636 all species → | Molecular Function | phosphoribosyl-ATP diphosphatase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
ANN20975-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
