Gene detail

Detailed information of ANN20978-RA in Montipora grisea

Genomic Location: Scaffold_19__1_contigs__length_4594208:3597185...3600268
NR annotation: HIE01508.1, translation initiation factor IF-2 [Thiotrichaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN20978-RA

ATGAGTGATGTGACAGTTAAAGAATTTGCAGACGTGGTAGGTATTCCCCTAGAGCGTCTATTATCGCAATTAGGTGATGCAGGCTTATCTGCTAAAAAACCTGATGACAGTATTAACGAAAAAGAAAAACGCCAACTTTTAGGACATCTGCGCCATATCCATGGTAAAGATGAGAAATTAGATAACTTGTCTGAAGAATCAAATAAAATTACTTTAAAACGTAAAAGCCATAGTGAAATTAAAGTACCAAATTCACAAGGTGGCAAAGCTAAAACCGTAAGTGTCGAAGTGAGAAAAAAACGCACTTACACTAAACCAGGGAACAGCGCGGCTAAACCTAAATTAAAAGCAGATTTAGGTAGTGCGGCTAATCCATTAGGTGGAGCGAAAAAGCCCAATGCACTATCAACAGGTGCACCAAGTGGTTTAGGTGGTAGCAGCTTAGGCGGTGGCCTTGGTGGCTTAAGTTCTCCTTCTGCTTTAGGCTCAGGTGGTGTCGGTGGTGGCTTATTGGGTCGCTCAATTCCAACCCCTGATCTTGATGGCAAAGACGATAACGTCGAGGATGACGAAGAAACACGCCGTCAAAAAATGGCTGAAGCGATTGCGGCTAAAGCAGCTGAGAAAGCCAAGAAAGAAGAAGAGAAACGTGCTGAAGCCGAAGCAGATGAAAAAGCCAAGCGTGAAGCAGAGCGTTTAGCAGAAATTGAAGCCAACGTTAAACGCGAACAAGAAGAGCGTATGAAGCGTGGCGAAGCTGAAAAAGCCAAGCGTCAAGAGCAACAACGCCGCAAAGAAAAAGAAACAGAAGCACGTAACAAACGACCCAAACCTGCTAAAGAGGCAAAACCTGAAGTACGCCCTAAAGCAGAAGTGAAGATCGTTAAGGAAAAACCGAAGCCAGAGCCTAAAGAAAAGCCGAGCAATCGTTCTCGTTCAGATAATCGCCGTAAACCAAGTGCAGACGGTGCAGGTGCTAAACGTAGAGAAGGTGGTAATACTGGAAATCGTCCAAGTCGTCCTTCAACACGCCCAACGTCAAATGAGGGTACGAATAATACATCTCCACCTAATAGGGGCGCAGCGGCAGGCGGTGGCTTTTCAGATGATAAGAAGCCAGCGAAGAAAAAACGTGGTGCAGCGAACAAGCAACAGCCACGTAAAGAAGGCAAAGTTGGTAAGGACGATAAGTCTAGCAAATACGCGAAGCAAGAATTACGTAGTGGTGGCGAAACATTACACAAACGCAATCGTAAGAAAGCAGGTAAAAAATCTAATCGTCCTGATTTACAGCCAACACAACATGGCTTTGTTAAACCAACTGCACCGATTGTCTATGAAGTCAACGTGCCAGAAACGATTTCTGTTGGCGACTTAGCTCAGAAAATGTCAATTAAAGCGGCTGAAGTTATTAAAACGATGATGACTTTAGGCTCAATGGTCACGATTAACCAAGTGATTGACCAAGAAACTGCAGCAATTGTGGTTGAGGAAATGGGTCATAAGCCTGTCTTGATGAAAGAAAATGCGTTGGAAGAAGATTTACTACAAGGCATTAAAATTGGTGAAGAAGTCCCACGTGCGCCAGTGGTTACGATCATGGGTCACGTCGATCATGGTAAAACATCATTACTTGATTACATTCGTAAAACCCGTATTGCGGCAGGTGAAGCGGGTGGTATTACCCAGCATATTGGTGCATATCACGTTGAAACGGATAACGGCATGGTCACCTTCTTAGATACACCGGGGCACGCGGCGTTTACCCAAATGCGTGCACGTGGCGCGAAAGTAACTGATATTGTTGTGTTAGTGGTTGCGGCAGATGATGGTGTAATGCCTCAAACCGTTGAAGCGATTCAACATGCTAAAGCAGCGGGTGTACCAATTGTAGTCGCAGTGAACAAAATCGATAAAGAAGAAGCTGATCCTGAACGTGTGAAACAAGAACTTGTAACACATGAAGTCATTCCAGAAGAATGGGGCGGCGAAAACATGTTCGTGCACGTTTCTGCAAAATCAGGTGAAGGCATCGACAGCTTACTTGATACCTTATTGTTGCAAGCGGAAGTCTTAGAACTGAAAACCGTCGCTGAAGGGCCAGGGCAAGGTGTTGTGGTTGAATCTCGCTTAGACAAAGGTCGCGGTGTGGTTGCAACGGTCTTGATTCAAAGCGGTACATTGAAAAAAGGCGATATTTTACTTGCTGGTCAAGAGTATGGTCGTGTACGTGCTATGCTTAACGAAGTGGGTCAACCGATTGCTGAAGCAGGGCCTGCGATTCCAGTCGAGGTGCTTGGTTTATCAGGTACACCGGGTGCAGGTGACGAATCGATTGTTGTCCCAGACGAACGTAAAGCCCGTGAAATTGCTCTATTCCGTCAAGGTAAATTCCGTGAAGTGAAACTAGCGCGTCAAAAAGCGGCGAAGCTAGAAGATATGTTTTCACAAATGCAGTCTGGCGAAGTCAATTCACTCAATATCGTACTCAAAGCCGACGTACATGGTTCTAGCGAAGCATTACAAGACTCACTTACTAAGCTTTCTAATGAGGAAGTTAGAGTTAATATTATCGCCAGTGGTGTGGGTAGTATTAACGAGTCTGATGCTAACTTGGCGGTGGCTTCCAATGCGATTATCATCGGCTTCAACGTCCGTGCCGATAGCAGTGCGAAACGTTTAATTGCTGAAGAAAATGTCGATTTACATTACTACAGTGTGATTTACGAAGCCATTGATGAAGTGAAATCTGCAATTGGTGGTATGCTTGCGCCAGAAATTAAAGAGCAAATCGTGGGTATTGCGGAAGTGCGTGATGTATTCCGTTCGCCTAAGATTGGTGCGGTTGCAGGTTGTATGGTGACTGAAGGTCAAGTTAAACGTAATAATCCTATCCGTGTATTACGCGACCATGTTGTGATTTATGAAGGTGAGCTAGAGTCATTACGCCGCTTCAAAGATGACGTGAACGAAGTGAAGTCAGGCATGGAATGTGGTATCGGCGTGAAGAACTACAACGATGTTCAAGTCGGTGACCAAATCGAGGTGTTTGAACGCGTTGAGGTTGCTAGAACCTTGAGTTAA

Transcript

ANN20978-RA

Protein

Uniprot

Uniprot term	Description
A3QGU5	Translation initiation factor IF-2 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=infB PE=3 SV=1
A7MZI5	Translation initiation factor IF-2 OS=Vibrio campbellii (strain ATCC BAA-1116) OX=2902295 GN=infB PE=3 SV=1
Q7MI09	Translation initiation factor IF-2 OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=infB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF04760	IF2_N	Translation initiation factor IF-2, N-terminal region	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF08364	IF2_assoc	Bacterial translation initiation factor IF-2 associated region	Family	Interproscan
PF11987	IF-2	Translation-initiation factor 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR036925	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR000178	Family	Translation initiation factor IF-2, bacterial-like	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR006847	Domain	Translation initiation factor IF-2, N-terminal	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR009061	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan
IPR015760	Family	Translation initiation factor IF- 2	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR013575	Domain	Initiation factor 2 associated domain, bacterial	Interproscan
IPR023115	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR044145	Domain	Translation initiation factor IF-2, domain II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02519	infB, MTIF2; translation initiation factor IF-2	-	Mitochondrial biogenesis	ko03029	deepkoala