Gene detail

Detailed information of ANN20988-RA in Montipora grisea

Genomic Location: Scaffold_19__1_contigs__length_4594208:3766350...3769410
NR annotation: HAI69133.1, hypothetical protein [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN20988-RA

ATGAGTCATTGGCTGCAGCCATTTGAACAATGGTTTTTACAACAACATATCAATCAATTAGCAAAACCTGCTTACCCCGAACTAGTGATTGTAACTGTGGATGAAAAGACACAAACAACATTACAAGAATATCCTATCAACCGCCAACATTATGCTGAATTTATTAAACAAATCTCACCTTATGCTAAAGTGATTGGTTTACACATTGATTTATCTCAGCCCCAGCCGAACCCTGTCCAAGCTCAAATTGACGCTTTGGTGACATACTATCAGCAGTCCAAATTACCCGCATTGCCTGAGCATTTAAAACAATTGCAACAGATCATCGCAGATAGCCAACATATTCGTGCACGATTAGCGACCGATCAGGCGATTTTATTTCAATTACAACAGTTTTATCAAAATAGCTTTGAACCTGATAAAACCTTGACTGAATTTATACAATTACAAGATAGATTAGCCAGTTTAAGTTACGATTTAAGCCATGATGTTCGTTTAAGCGAAGTATTGGCACAATCGGATAATGTGATATTAGGACAAACTGTAGATAAGCCATTGCTTAATATTTTTGGTGAATACAATCATATGGTTGCAGACATAGATAAGCCAAGCCGCTTTGCTGCCGCTATTTTGCAAAAGATAGATTATTCACAGGTATTACCTCATTACCTGATTCCTATTAGCCATAAAAATTTACGAATTGAAAGTTTTGCCGATGCTTTACAACAAGACCCAAAAAATTATCAAAATAAAATTGTTTTAATTGGTGATGTCACAGGCATTCAGCGAGAGCATTTATTAGATACAGCAAGCATCTTAAATAGTGTGCTGAATCAACAATATTTGCAACACCATCAATTGGCAAATTATATAGAAATGGTTTTGTTCTTTGCGAGTTTTCTCTACTTATTGGCTGTACAACCACGTTTAAAACGTAGATGGTCAATAACCATATTATGGATTGTGGCTTTATGGATGATATATGTGGGCTTATTTTACTATGGTTGGTACACGCATTTTATGTTGCCTGTTTTGCTCGTGGTGAGTAGTTATATCATTTTGAGTTTAAAGTACTTAATTGAAAATTATCAAGATGCGGTACGGTTGCATCCAGAAGCAGTTGAAAGTAATCGTTTATTAGGTTTGGCATTCCAAGGACAAGGTCATTTAGATTTAGCGTTTGAAAAGTTTCGTTTATGTCCACCTGATGAGACCATGTTAGGATTATTGTATAACTTGGCATTAGATTATGAAATCAAACCACAGGCACGGCGTGCTATTGCTGTTTATCGTTATATCTTAACTCATCAACTTGATTTCCGAGATGTACAACAACGTTTAGACCGTTTACAACGTTTCAGTTTACCAAAATTACCATTGCATCAATTATCACAGACCACTTTAGACAATAGCGCGCAAAAACCCAGCATCGGCCGTTATCAAATTGAACGTCAATTAGGCAAAGGCGCGATGGGTGTGGTGTATTTAGGGCAAGATACTAAGCTTGATCGTTTAGTGGCAATTAAAACGTTACCTTTATTTGAAGAGTTTGATAATGATGATTTACAAGAGGCCGTTATTCGATTTTTCCGTGAAGCCAATGCAGCAGGTCGTTTACAACATGACGATATTATTCGCATTTTTGATGCGGGTGGAGAACAAGATTTAGCTTATATTGCGATGGAATTTTTTAAAGGTGGTAATCTCATTCCTTATTCACGTAAAGAAAATCTGTTGTCTATCAATATTGTATTAGATATTATCAGCCGCATTGCGCTCGCACTAGATTATGCACATCGACATCAAGTAGTACACCGAGACATTAAACCTGCTAATATTATGTACAATCCTGCGACAAATCAGATTAAAATAACCGATTTTGGGATTGCACGTATTACTGATACGCATAAAACAAAAACGGGCGTTATTTTGGGTACACCTTCTTATATGTCTCCAGAACAGTTGGCAGGCTTGGTTAGAGACCATAACGAAGATTATCTTAGTTGCGATGACACACTGGGGTTGGTTGTACTGGCTGATGGCATGGGAGGCTATCAAGCAGGCGAAGTGGCCAGTGAAATTGCTGTACAAACGGTGATGTCAAATTTGACGGAACTGGCAGAGTCTGCAACAGAAGAAAATGATAATCCACTTGCAGCACACACCAGTTTGCAATTAGAGCAAGCGATTGTGAAAGCCAACCAGTCCATTTTTAAAGCGGCTGAGGAACAGACCAAATATCATGGCATGGGCACAACAATTGTCGCAGCATTATTTCATGATAATACGGCTTTTATTGCACATGTGGGTGATTCTCGTTTATATCGGTTGCGCCATCGTGAGTTTAAACCATTAACTAAGGATCATTCAGTATTACAGGACTTAATTGACTGTGGCTATTATACGCCAGAGCAAGCTCGCCACTCTCCCAACCGTAATCTAGTAACACGGGCATTGGGTGTGAGTAAAACGGTTAATGTCGATGTACAAGAGCAATTTGTATTAGCCAATGATATTTATTTATTATGTTCTGATGGTTTGAATGACATGTTAGAGGATATTGAAATTTATAATATTCTCAATGAGTGTCAGCATGATTTATCTTTAGCCGCGCAAAATTTGGTAGATGCAGCTAACAATAAAGGTGGAGAAGATAATATTTCCGTTATTTTAGTCAGAGTATTACTTGAAGATTTAAATCAGGATAGAAATTGGTGGCAAAAGCTCGTTAACTTTCGATTTTTAACATAA

Transcript

ANN20988-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O34779	Protein phosphatase PrpC OS=Bacillus subtilis (strain 168) OX=224308 GN=prpC PE=1 SV=1
Q8Y678	Serine/threonine phosphatase stp OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=stp PE=1 SV=1
A0AJS6	Serine/threonine phosphatase stp OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CCUG 15529 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8) OX=386043 GN=stp PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0030002 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05226 all species →	CHASE2	CHASE2 domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF13672 all species →	PP2C_2	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036457 all species →	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001932 all species →	Domain	PPM-type phosphatase-like domain	Interproscan
IPR007890 all species →	Domain	CHASE2	Interproscan
IPR050660 all species →	Family	NEK Serine/Threonine Protein Kinase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43671 all species →	SERINE/THREONINE-PROTEIN KINASE NEK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN20988-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →