Gene detail

Detailed information of ANN21001-RA in Montipora grisea

Genomic Location: Scaffold_19__1_contigs__length_4594208:3901943...3902863
NR annotation: NJO16608.1, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD [Thioploca sp.]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P33643	Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli (strain K12) OX=83333 GN=rluD PE=1 SV=4
Q8ZBV7	Ribosomal large subunit pseudouridine synthase D OS=Yersinia pestis OX=632 GN=rluD PE=3 SV=1
Q8X9F0	Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli O157:H7 OX=83334 GN=rluD PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan
PF01479	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR036986	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR006225	Family	Pseudouridine synthase, RluC/RluD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06180	rluD; 23S rRNA pseudouridine1911/1915/1917 synthase	EC:5.4.99.23	Ribosome biogenesis	ko03009	deepkoala