Gene detail

Detailed information of ANN21022-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:22000158...22018262
NR annotation: XP_020622494.1, alpha-actinin-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN21022-RA

ATGGCTAATGATAATACGGAATATTATGGCTATTATTATGATACTGAAGAAGATAAAGGGTTACTTGATTCTGCATGGGAAAGACAACAACGCAAGACGTTTACAGCATGGTGCAATTCTCATTTGAGGAAATTGAGCAAGCAGATCGATAACATCGAGGAAGACTTTCGCGACGGCCTGCTACTAATGGCGTTATTGGAAGTAATATCAGGAGAAAGACTCCCCAAACCTGAAAAAGGTCGATTGCGGGTTCATAAGATTGCTAACGTTAATAAAGCTTTAGATTTTGTGGTTGGCAAAGGAGTGAAACTGGTGTCGATTGGAGCTGAAGAAATCGTGGATGGCAATCTTAAAATGACCCTTGGAATGATTTGGACGATAATTTTGCGGTTTGCTATTCAAGATATAGCTGTAGAAGAATCGTTTGCAAAGGATGGCTTGCTCCTTTGGTGTCAGCGCAAAACAGCACCATACAAAAATGTCAACGTGCAAAACTTCCACACAAGCTTTAAAGATGGCTTGGCGTTCTGCGCTCTTATTCATCGCCATCGGCCGGACCTTATCGATTATAACTCTCTGAGCAAGGAAAATCCATTGGAAAACCTGAATTATGCCTTTGATGTTGCTGAGCAGCATTTGGACATTCCAAAAATGCTTGACGCTGAAGACATGGTCAACACTGCAAAGCCTGATGAGAGAGCTGTCATGACATATGTCTCTTCTTACTACCATGCATTTACGAGCTCACAGAAGGCCGACACAGCAGCAAAGCGTATTGGCAAAGTGCTCACTATCAACAGAGGCAATGAGAAGATGATGGAAGACTATGAAAACATGGCTAGTGATCTGCTTGACTGGATCAACAAAACTTTACCTTGGCTTGAAGACCGGAAGAGTGAGGGAACCTTAGATGATATGCAGAAAAAGCTGGATGCTCTTCGAGTTTACAGACGAAGTGAGAAACCTCCCAGAGTGGAAGAGAAGGGCATGTTAGAGACAAACTTCAACACATTGCAAACCAAGTTACGGCTTGGAAATCGACCTGCATACCTCCCCACAGAGGGAAAGATGATCAGTGACATTAATCGAGCCTGGGGAAATTTAGACACAGCAGAAAAAGATCTAGAAGATTGGTTATTGACAGAAATGAGACGATTGGAACGCCTGGATCACTTGGCTGAAAAATTCAAACACAAATGCAATATTCATGAAAGTTGGACCTATGGGAAAGCTGACATTTTAAAAAAAGAGGATTTGGAGAATGCTACTTTGGCTGAAGTATTGGCCTTTAAAAAGAAACATGAAGCATTTGAAAGTGATTTGGCAGCACATCAAGACAGAGTGGAGCAGATTGTAGCAATTGCTCAGGAACTGAATTCATTGGGTTACAGTGATGTTGATTCTGTGAATTCAAGGTGCCAGCAAATCTGTGATGAATGGAGAGAGCTTGGACTGCTCACAGAGACTCGTCGGTCTAAGATTGAGGCACGTGAGGCAGTACTCCAGAAGCTTGACTATTTGTTGCTTGAGTTTGCCAAGAGAGCAGCGCCTTATAACAACTGGCTGGAAAGTGCACGGGAAGATCTGATGGACATGTTCAGTGTGCATACATTGGAAGAGATAACGGAACTACAAGATGCTCACCAGGTGTTCAAGGACAATATGCCTGCTGCCAATGCAGAGTTTGATGCTATCATGGCGATAAGTGCAGAGATAGAGGCAATAATTGATCAGGAAAACCCTTATACAAGTCTTACAAAACAGGAAATATCTTTAGCTTGGGATGAAGTGAAAGAATTGGTTCCCAAGAGAGATGAGCTTCTGGATAATGAAAAGGGCAGACAGCAGCGAAATGAAAGACTTCGTGTGGAGTTTGCAAACAAGGCTAATGATATTGGACCATGGATAGGGAACAAAGAGGAAAAGTTAAGGTCAATTGCTCTGAAGATGCAGGGTTCACTGGAGGAGCAACTGAAAGATCTTCAAGGGCTTGAACGAGATGTTGCTGACCACAAACCTCAGATGGATGAACTGGAGTTAGTCCACCAG

Transcript

ANN21022-RA

Protein

Uniprot

Uniprot term	Description
P05094	Alpha-actinin-1 OS=Gallus gallus OX=9031 GN=ACTN1 PE=1 SV=3
Q3B7N2	Alpha-actinin-1 OS=Bos taurus OX=9913 GN=ACTN1 PE=2 SV=1
Q9Z1P2	Alpha-actinin-1 OS=Rattus norvegicus OX=10116 GN=Actn1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan
IPR001589	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR002017	Repeat	Spectrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0030018	Cellular Component	Z disc	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0055001	Biological Process	muscle cell development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05699	ACTN1_4; actinin alpha 1/4	-	Exosome	ko04147	deepkoala