Gene detail

Detailed information of ANN21069-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:23406415...23449645
NR annotation: CAH3176157.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN21069-RA

ATGAATGCACCATTCACTGGTTTAGCCATACAGAAAAAGCGAACTAACTTGTCTCCAGACAATGTCGCAACATATTACAATGGTAAGAGTGCATCACAGCAGAAATTAACACAAACAGGCAAAGAAAAGGAGGACAGTTTACCCAGGGGTAGCTGGGCATCAAGCATTTTTGACCTGCAGTCCTGTAACCCTGATCCCTTGCTTCCTGCTGTTCTTGATCGCACTCCTGGAGATGAGGTGGACCGTGCAAATGAAGAGGATCGCCAACAACACAGAATACACTCTCTATTTTCCATCTATTCTGTTCAACAGGAAGAAGGGATCGAAAAGAGAGTTCCTGCAACTATTCCTCAAGAACATTTTGGGCAGAGAATTTTGGTCAAGTGTCTTCAACTCAAGCTTGAGTTGGAAGTGGAGCCAATATTTGCATCAATGGCTCTGTATGATGGAAGAGTGAAGAAAAAGATATCAGAAAACTTCTACTTTGACATGAACAGTGAGTGGTGCAGAAAGTTGGTTAAAGAGCACAATCCTCGCACTGACATCTCTACTCTCAGTCGCTCAGCGATATTTTCCATCACATACCCCTCAACAGATGTGTTCCTTGTCATAAAATTAGAAAAAGTTTTGCAACAAGGAGACATCAGTGAATGTGCTGAACCATACCTGAAGGATACTGAAAACCCTAAGCATAGAGACAAGATGCGTTTAGCAGCTGTATCAAACTGTGACAGGCTTGGCAAGTATCGCATGCCATTTGCTTGGACTGCTATACATCTAGTGGACATTATCACTGGGAAGAACACTGACACAGGACCTGTTCAGGAGAAAGACAGTCCAGCAGCTACTGTTCCAAATAGAAGGCAATCTGGTATGGTAGATGCGCCATCTGCAATGCTACGTTCCAGCAGAGGTTCAATTTATGAAGCACGGAAGTCAGTTCATCTGGGTGATGGTGCTGAATTAGACATAGTTCCTGATCTTACAAATTTTAGACCTGTCACACTTACAGTTAGCAGTTTCTTCAAACAGGAATCAGATAAATTGAAAGATGATGACCTGTACAAATTCTTAGCTGACCTGAAAAGACCGTCAGCTGTATTAAAACGTCTCAAGTGCATTCCAGGTACACTAAAGCTGGACATTTCTCCTCCTGGAGACAAACCACCTTACTGTTTAACTTCTGAGTTACACCAGGTAAACCCATACCCTGATGGACAGGGTAGACCAACCAAAGAAATTGAAGAGTTTGCCCCCAAAGAAGTGTTTACACCTTACCTCACGTACAAGAACTTGCTGTATGTGTACCCCTTGAGTGTCAATTACACTAGCCGCAGTTCGTCAGCCAGGAACAAATGGCTCCTCTTGAGGGCTCCAGACTTTTATGAAGAAGTGAAGATGAAGCTACCAGTTAACTTGACAGCTGAGCACCATCTGCTTTTCACATTTTATCACATCAGCTGTTCAACAGGCAAGAAACCTGATGAGAAAGTACCTATTGAAACACCCATTGGATACACGTGGATCCCTGCTGTGAAGGATGGCCGATTGTCATTGGGTGAATTTCATCTTCCTGTTTCATTGGAGAAGCCACCCCCAAGTTATAGTATGCTTTCCCCAGAGGTTCCACTTCCTGGTATGAAATGGGTGGAGGGCCACAAAGGAGTTTTCCATGTTGCTGTTAGGGCAGTGTCTTCCATTTATACACAGGAGCTACATATTCACAAATTTTTGAAGACTTGCCATCAAATTGAGGGGTGGATTACATCATCACCAAGCCGTAGCACTGAAGGAAATCTGGAGACTGCATTGAGAAAAAGCATTGTTGACCTGTCCAAGGCACGGGAGGAGCCTCTTGTGAGGTTTCTGTACCTTGTTTTGGACAAGCTTATCTTGCTTCTAGTCAGGCCACCTATTATATCAGGAACTGTAGTGAACATTGGCCAAGCAGCGTTTGAGTCACTGACACAGATTGTTCGCCGGCTTCATCAGATGCTGGAGAACAGCGAGGATGAACATGGCCGTAACCAGCTACTGGCATCCTACATCACTTATGTGTTTGCTGCACCTTATAATCACTCACCAACAGCATCACCTGAACATTTTACAGGAGAGCCAGGACGTTCAGCAAGTATCCCAATAGGCCTGCAGGGTAAAATTTGGCAGAAGCTCTCAAGCAGTAATCCCCAACTCAATGCACCATTGACTGATCAACAGCAAGAGTCACATGGATCTGGAAAATGGGTTGATGGTGATGACGAGCCGATGATATGTGAGGGTTTGAACATGCCTGGCAATAGAAGCAGCATGGCAGAAGCACGGTCAAGCTCGCTTGCTGTCCCTGGTCTTGGCCATAGCAGCAACAGTAGTAGAAAGTTAGTGCATGAGGAATTAGCTTTACAGTGGGCACTGGCCAGTGGACCTCTTGGAGCAGGTTCCAAACTTTTGTTGCAGCTGGAAGACATCCGATGTGACATGCTTTGCTCTTTCAAATTTGATTGTTGCATTTGCAGTTTAAAAGTATGGCCCAGCACCTTGAGAACACAGACAAGTTCTTCTGGACAAGAAAGAGTCGTTTTCCTGATCAATTCTTGGGTGACATACGAGCCATGGTTAACTCCACAGTCTATGAAATCACCACTAAACTTGAGGTGGGATTTTGTTCTTGCTCAGAGGCTAAACTCCAGCCTTGCCTTCTTCTTGTATGACCTATTTTCACTGATTGACAGAGGCTTTGTTTTCGAACTTGTCGGACATTACTGTAAAGAGATGCTTTATCAAGGCACCATTGATCCAGAAGCATCACAGCTCAGACTCGAGTTCCTGAGGATTGTTTGTAGTCATGAACATTATGTAACTCTTAATCTGCCTTTCCCATCTCCATTGTACCCATCCCCACCCCCCTCCCCTACAAATTCAGTCTCGTCGATTGGCTCTGCGGCCTCTACGTACACAGTGATCATTGGTAACAGCATGGCGGAGCTGTCAACTGCCTTTAGACAGCAGCATTTCATGGCTGGCTTGGTCTTATCTGAACTGGCTTTGGCTTTGGAGGGAGGGGACATGACCTTGATAAACCAAGCCACAAACACCACAAGAGACCTGATTGCCTGTCACGACTCAGACACTCGTTATGGTGATTTGTCGTGTCGCTCTGCTGTGGCTGCACTTTATCTGCCCATAATTGGTTTAGTTGTTGGAGCGTTACAGCAGCTGCATGGTTATGGCAGCGAGGAAAACTCCAGCATCACTCCAGATGTGGCAATGGCCATAGCTACCTCCAGCATAACAGGTGCCATGGCGACCGAGGAGAGCAAGGGTGACATGGCTTCACAGAAGAGTAAACCACAGCAGTTAAGTCTGGAGACAACAAGGAACCTTCTGGTGTGCCTGTTATGGGTGCTGAAGAATGTGGACAGTGAAGTGTTGAAGGATTGGTGGGCAGACCAGCCATCCTCAAGATTGGGCTTGTTACTGGATGTTCTTCGGCTGTGTGTTACTCTGTTTGAGTATGGCGGCAAGATTCAAAAGTCGTCACAGTATCCAACTGCACCAAGGCCAAAAGCACAACAAGAGATGAAAGCCAAGCTAGAGGAGATGATGCTTGGAAACAAGGGAGCTGCAAAGGAAATGATGCAGCGTCACAGCAGACTCATGCCAGAAAAGGGTCAGTCACCAGCAACAGAATCCAGATTAAGATGGCATAAAGATCAAACACAATGGAAACAGGCAACTGAACAACAAGACAGACTTCGTCCCGAGGCAGAGGTGAATGCACAGGTTGAAGGTGCCCTTGCAGCTGAAGTGAATTCAGTTGTTCTTGATTCATTGGAGCACTTGGTCCAGACGGTGGCAACATCGGATTCTTTGCGTGTGGTTCTAAGTGGAATTCTCCAAGTGCTGCTACACTGTTTAAACTGCAACCAAAGTGAAAGAGTGCTACAAAACATGTTTACAACACAAAGATCCATTGTGTACAAGGTAAGTGTATCACAACTGTTCCCTGAACTGCTGTTTGAAGATGACACAGAACTCTGTGCAGACCTGTGTTCCAGGCTCCTGAACCACTGCAGCTCGGCCATCAGCAGTATTCGAGCCCAGGCCAGCGCATCTCTTTATCTTCTGATGAGACAGAACTTTGAAATTGGAAATAACTTTGCTCGTGTCAAGATGCAGGTTACAATGTCGCTGTCCACGCTTGTTGGAACTTCACACGTTAGTTTTGAAGAACATCTCCGGCGTTCACTGAAGACAATCATAACTTATGCTGAATCTGATCAGGAGCTGAGAGCAAGTACTTTCTCGGATCAGGTCAGAGAGTTGGTGTTCAACCTTCACATGATTCTGTCAGATACAGTCAAGATGAAGGAATATCAAGAGGATCCAGAAATGTTGATTGATCTGATGTACAGGATTGCCAAAGGATATCAAAACTCGCCGGACTTACGACTCACTTGGCTATACAACATGGCTGCCAAGCATGGCGAGGTTAATAACCATGTTGAAGCAGCCATGTGTACATTTCGTATAATTTTCTTTAAGGATGAGGAGGGCATTTGTACCGGAAAGTACTTTTGTGAAAATGGCTTGGTGTCCCTTCTGGAAAAGGCTGCCACTACATTTTTCCGTGCTCAGCTGTTTGAGTGTGTAAATGAAGTCTACAAACTACTGATACCTACACTAGAGGCCAGACGTAACTACAAAAAGCTAACACACGTTCATCAGAAATTTTCAGAAGCCTTCAGTAAGATTATACAAACGGAAGGAAAGCGCATGTTAGGGACATATTTCAGAGTTGGATTTTACGGATCAAAATTTGGCGCCTTGGATGGTGAAGAGTACATTTACAAAGAACCGGCCATCACAAAGCTGCCAGAAATTTCACATCGTTTGCAGGTTTGTTGA

Transcript

ANN21069-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96N67	Dedicator of cytokinesis protein 7 OS=Homo sapiens OX=9606 GN=DOCK7 PE=1 SV=4
Q8R1A4	Dedicator of cytokinesis protein 7 OS=Mus musculus OX=10090 GN=Dock7 PE=1 SV=3
Q96HP0	Dedicator of cytokinesis protein 6 OS=Homo sapiens OX=9606 GN=DOCK6 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000675 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06920 all species →	DHR-2_Lobe_A	DHR-2, Lobe A	Repeat	Interproscan
PF14429 all species →	DOCK-C2	C2 domain in Dock180 and Zizimin proteins	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043161 all species →	Homologous_superfamily	Dedicator of cytokinesis, C-terminal, lobe A	Interproscan
IPR046769 all species →	Domain	DOCKER, Lobe A	Interproscan
IPR026791 all species →	Family	Dedicator of cytokinesis	Interproscan
IPR027007 all species →	Domain	C2 DOCK-type domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR027357 all species →	Domain	DOCKER domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23317 all species →	DEDICATOR OF CYTOKINESIS DOCK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN21069-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →