Genomic Location: Scaffold_15__1_contigs__length_9942800:1772133...1773554
NR annotation: NND97088.1, sigma-54-dependent Fis family transcriptional regulator [Pirellulaceae bacterium]
| CDS | ||||
| ANN21131-RA | ||||
| Transcript |
| ANN21131-RA |
| Protein |
| ANN21131-RA |
| Uniprot term | Description |
|---|---|
| P41789 | DNA-binding transcriptional regulator NtrC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=glnG PE=1 SV=2 |
| P0AFB9 | DNA-binding transcriptional regulator NtrC OS=Escherichia coli O157:H7 OX=83334 GN=glnG PE=3 SV=1 |
| P0AFB8 | DNA-binding transcriptional regulator NtrC OS=Escherichia coli (strain K12) OX=83333 GN=glnG PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00072 | Response_reg | Response regulator receiver domain | Domain | Interproscan |
| PF02954 | HTH_8 | Bacterial regulatory protein, Fis family | Domain | Interproscan |
| PF00158 | Sigma54_activat | Sigma-54 interaction domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR001789 | Domain | Signal transduction response regulator, receiver domain | Interproscan |
| IPR003593 | Domain | AAA+ ATPase domain | Interproscan |
| IPR025662 | Binding_site | Sigma-54 interaction domain, ATP-binding site 1 | Interproscan |
| IPR009057 | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR002197 | Domain | DNA binding HTH domain, Fis-type | Interproscan |
| IPR002078 | Domain | RNA polymerase sigma factor 54 interaction domain | Interproscan |
| IPR011006 | Homologous_superfamily | CheY-like superfamily | Interproscan |
| IPR025943 | Binding_site | Sigma-54 interaction domain, ATP-binding site 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32071 | TRANSCRIPTIONAL REGULATORY PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000160 | Biological Process | phosphorelay signal transduction system | Interproscan |
| GO:0016887 | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0043565 | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0008134 | Molecular Function | transcription factor binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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