Gene detail

Detailed information of ANN21172-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:25253682...25265458
NR annotation: CAH3167553.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN21172-RA

ATGGCGGACCACAGCTTGAATAACGTTGAAGATAACTTCCACGATTTAGAAGAGGAAGACGAATCTAGTGAGTGGACTGAAATATTTAGCGTACCAGAAATGGAATGGAGAAGCCTTGGGAGTAATACCTGGTCAAGGAATGGTATAGAAAGGGAAGAAAATTCAAACACCAAAGACGTTATAAACCAAGACGTCGAGCAAGATAAAGTGATTGTTGAGAAAGACGGAAAGAAGACAACAGATAGCTCAAAAAGTCTCACCAGAATGGAGCTAAATGATCATAAAGCAGGAATGGTAGGTCTTGATAAGGAAAAAATCAACCAAATCATATTTGAAGCAAGCAAAGGTTCTCGGTTCTATGAGAATGAATTGAAGAAAGATAAACAAGTCGCTGAGAGGATCAGAAAACAAACCGCCTGCCTTGAAAAAATCACCGAGCAACAGAGACAAGAAGCATTACAAACCACACAACTGATCGTAAAAGAATTGGAAAAAACGCGCGATTTAAGTCGTACCTTCGTTCATATTGACATGGACGCGTTCTATGCTGCAGTCGAAATCTTAGACAATCCTGAATTGCGTGACAAACCCATGGCTGTAGGAGGTAACGCAATGTTGTCTACATCAAACTATCCTGCTAGGCGTTACGGTGTTAGAGCAGCTATGCCGGGGTTCATAGCCAAGAAGTTATGTCCCGAACTTGTCATTGTACCACCTCACTTTGAGAAATATAAAGAATATAGTCGCCAAGTACAAGAAATCTTAACCGAGTATGACCCTAATTTTGCAATGGCAAGTTTAGATGAAGCATATTTGGATCTGACAGAGTACCTCAGAGAGAGGCAAGAAAACAAAGAGAAAAGGACCTTCAGAAGGTCAAAAGGTCATTCGGAATCAAAGCCAGGAATTGAAACAAAGCAAGACCATGAAATGATGGCTAGTGAGATTGTGGAATTTGGTAACGATGTAGAAGAAGTTGTGAGGGAGTTACGTTTTCGAATTGAACAGAAAACTCGTCTTACAGCGAGTGCTGGAATCGCACCTAATGTCCTACTTGCAAAGGTCTGCTCAGATCGTAACAAACCCAACGGACAGTTTTTCCTTAAGCCAGACTACAAGGTTGTTTTAGAGTTTGTTCACAAACTGCCAATAAGGAAAATAAGTGGAATTGGAAGAGTTAGCGAGCAGATGCTCAAAGCTCTAGGCATAGAGACCTGCAAAGATCTCTACACGAAACGAGACTTGCTCTATCTCCTGCACTCTCCAATCAGCTTCAGATTCTTATTACAAGTCTCACTTGGCCTAGGAAACACTTCAATTGCGACTGACTCCAAAAGGAAGAGCATTGGAACAGAGACAACCTTTCCAGAAATGAGTAAACCAGAAGAGCTACTCGATATGTGCGAAAAGCTGTGTCAATCACTGGCAGAAGACTTGAAAAGAGAGAAGCTTAAAGGAAAGACCGTCACAATTAAGCTCAAGACTGTGAACTTTGAAATAAAGTCTCGATCTTTGTCACCACTGAACCCCGTTTCCACTTACGAAGAGATTTGCCTAGCAGCTAAGGAGCTGCTTAAAAATGAAATCAGTGCTTGTTCTCCTGACCCACTCAGACTTCGCCTCATGGGAGTCCGCCTGTCAAACTTTCAAGATTGTATTTCTGATTCATCAAAAGATGGACGACAGAACACAATTACAGAGTTTTTAAAACCAAAGAAAAATGTATCGCATTTGAAAACTGCCAGTTATTTCACTCATACCCATGAGTTTACCAACCAAGAGTTTTCCATCGATGAACAGCCTGCTGACGAAAATTTAAGTAAAGAACTTGGTCTGGTGGCACAACCATCAGATTTCCTCGGAACTGATAAAACTGAAGACTCGGATATCTCGTGCTCATCGTCGTCCATTGAGCCAATCGCGTGTTCAAAATCCAACGCGTTTAAAACATGTGCGGGAACCTGCAACCCGTCAGCTCTGCTGTGTCCTGTGTGTGGACAAGAACAATTAATAAAGCCGAGTGAAGACGCCATGATTGAACTGAATAAGCATATTGACTTATGCCTAAACAAGGCAACCATCAGAGAGATTGTATCACGGAACAATTCAGGTGCGGTGAACAATAACTGTTCCTCTGACAATGGCAGGGGTACTGAGGCGGCAAGTTATCGAGGCAAGAGAAAACGGGAACAATCAAGAACAGCGTCAAAGAAGGCGACACTACACTCCTTCTGGTCGAAAAATCTTATCCTGATGTTATTGGGTCAAGAATGGCCTTGTCTTATCAATGATGTACAATCAGTGGTCTTCACACACTGCTCATCTTCGCGGGACTTTTCCTCCATGGAACGCGGGACTATTCGCCTGATAGCCCTGGTGATTGTTTATATATTCTACCTTTCCGTGGGTGCCGCCATATTTTCGTCAATCGAAGGACCTTACGAGCAGAGAATATTGTCAGATTTACGAAAAAAGCGAGATGACTTTCTACTGAAGCATCCGTGCGTCACTGATGAAGAACTTGAAAGCTTTGTCAAACATGTGGTGGCAGCCCAAGAGATGGGAATCCAGCCTCTTGGTAATGCGAGCGACAAGAGAAGCTGGGGATTTGGCAGTTCGTTTTTCTTCGCAGGAACTGTAATAACCACTATAGGTTATGGGAACATAACTCCCCTGTCTGATGGTGGAAAGGTGTTTTGTATGGTGTTTGCAGTCTTTGGTATTCCCATGACCGCTATCATGCTGACAGCCATAGTAGAACGACTCCTGCAGTTAACAGACTTCCTGGAAAAGTTCATGTGTAGCACGTGCACCGTGCGTGGAATCCCGCCTGCTTATCTGCGCTTTGTACACCTGTCAATCATCATGTGTGGTGCTGTCATGCTCGTCATCATAATACCCGCCATTTTCTTCATGTTCCTAGAGGACTGGAGCTACTTTGAAGCGCTTTATTTTTGCTTCATTTCGCTGACCACTATAGGACTTGGAGACTTTGTGCCTGGTGACGACCCTAAATGGCGTAAGAGTGATTTCCGGCCGCTGTATAAGGTGTGCTGCGTGTTTTTCTTCATCACTGGCCTCACATTCTTACTTCTGATTCTGGAGCTTTGCGCTAAGGTCCCGGATGACCATCCGGGCATGCTTTTCTCGTGTCACAAGCCCTTCATCCAGGAGGAAGAAGATGAGCCTTTGTCAACCGGAATTAAATTACGTCCGAGACACTCGGCGTCGAGTAGAGGAAGTAGCTCATCGTCTCCAGAAAATGGGAGACCTTCCAGGAACACGTATGAAAGAATATCTTCCCGGGACAATGGCAATAGATAA

Transcript

ANN21172-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QUG2	DNA polymerase kappa OS=Mus musculus OX=10090 GN=Polk PE=1 SV=1
Q9UBT6	DNA polymerase kappa OS=Homo sapiens OX=9606 GN=POLK PE=1 SV=1
Q6JDV7	DNA polymerase kappa OS=Arabidopsis thaliana OX=3702 GN=POLK PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007185 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00817 all species →	IMS	impB/mucB/samB family	Family	Interproscan
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF11799 all species →	IMS_C	impB/mucB/samB family C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036775 all species →	Homologous_superfamily	DNA polymerase, Y-family, little finger domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001126 all species →	Domain	UmuC domain	Interproscan
IPR003280 all species →	Family	Two pore domain potassium channel	Interproscan
IPR022880 all species →	Family	DNA polymerase IV	Interproscan
IPR005408 all species →	Family	Two pore domain potassium channel, TWIK family	Interproscan
IPR050116 all species →	Family	DNA polymerase type-Y	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR017961 all species →	Domain	DNA polymerase, Y-family, little finger domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11076 all species →	DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0005267 all species →	Molecular Function	potassium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042276 all species →	Biological Process	error-prone translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN21172-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.