Gene detail

Detailed information of ANN21215-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:26000521...26001081
NR annotation: XP_044163310.1, gem-associated protein 6-like [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KHW8	Gem-associated protein 6 OS=Bos taurus OX=9913 GN=GEMIN6 PE=2 SV=1
Q8WXD5	Gem-associated protein 6 OS=Homo sapiens OX=9606 GN=GEMIN6 PE=1 SV=1
Q9CX53	Gem-associated protein 6 OS=Mus musculus OX=10090 GN=Gemin6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009262 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06372 all species →	Gemin6	Gemin6 Sm-like domain	Domain	Interproscan
PF20417 all species →	Gemin6_C	Gemin6 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009422 all species →	Family	Gem-associated protein 6	Interproscan
IPR047574 all species →	Domain	AD domain	Interproscan
IPR046857 all species →	Domain	Gem-associated protein 6, Sm-like domain	Interproscan
IPR046856 all species →	Domain	Gem-associated protein 6, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14710 all species →	GEM-ASSOCIATED PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032797 all species →	Cellular Component	SMN complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13134	GEMIN6, SIP2; gem associated protein 6	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.