Gene detail

Detailed information of ANN21233-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:26223772...26230692
NR annotation: CAH3178810.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN21233-RA

ATGTACAAGGGTTTGAGCAATGAAAACCCCCCTGACATCACAATTCTTAATCCTCCTCCGCCCTGTTTAACAAAACTCCCCACGGACTATCAAGCTCAGTTCGGCCCATTGCGACTCTACCACGGACAGTTCTTTGTTACATGGGACGTTTCTCGCTTATGGGTCCAAGACACATCTCCTTGTGCCTTGGTTGGTTACCATGGCAACTTCGGTGACAATGTGAACGATAGCTCTTTGCCCGTCGGTAAAAGTGCTTTTGTAAAGCTCATGTTATTTACAGAGGCATTCCGTAATAATACCACGGATCATGTATTCAAGGAATCAGGATTTGATATGTTTGGAACTACTGGCGCAGCCATTGAAACTTTAGAAACAGACAAGGAAACTGATCCGTTTAAAAAGTATCAAGACATACGGCATCAGGATTTCGGAGAGATTGTGTTTCGAAAACAAAAACGATCCAAGAAAAAAGCGAACAAAGTTGTAGATTCTTCACCGAAGGCAGTGTTAGATTCTAAACACCAGATGAAAGATGAGCTAGCTATAAGCGACGTTTCCCTACCCACTGTCCCAGATGACAATCACAACTCTTCAGACTCACCTGACGATCCCGACCCCACAGTTAATAGATTGTCCAATATCTCTTCAGACTTTGACTCTGCTGATAAGTGTAGTGAAACATCAGGACAAAACCATGATTCAGAGGGGGAGGGCGAGATGTCTTCCTCGCAGCCTCATTTAAGGGTTGTTCACGTCACGCCAGAAGGCGTACAAGAAAGAGATGCAGTGGATGATGTTAGCTACAGGGCATCCGTGACGCAGCGAGACTCAAGTATTGCAGATGATGACGAGACATCTCAGATTACTGGTGTGACATGCGTGACAGAGGCAGTGGGTGATGTGATTGCAGTGGAAAGAACAGATGAACTGCGCGTGTCGCCCCTTTCAACCTCCGTTTCTGATGACACCCTTTCAACAGAAAATAGCCTGTGCATGGATTCAGTTTCTCTGTCTACAAGCACGTTAATGGAAGGGGACATTGATAATGAAGATAAAACATTCAGTCCGGATAGATCTTACCAAGCCGACTATCTACCGAACATTTACTCGGACACTCCGGTGAACATTTCGGATATAACATTTTCTGATGCTTCATTGGAAAAGTCTCATCTCTCCAAAAGTCGGCTCGTGGACTCCAGTGTGTCTGTCCTTTCTTCGTTACCTCGAAGTGCGAGCAGTGGTATTCTGTCTGACTCTGAGGGGACGCCTCCCGTGTCTTTAGATTCGGAGGGTGCAGAGGAACTCAGCGATACCGCTTCATGGCCACGGTCCCCCTCTAGGAGGACCATGAGCGATCTTGAAATAGTGCACCCTGAGGATGTGCCTCCTCTGGAAGGATCCTTTTCGTCCACAGGCTCAACCAAAATAGGCCTGCGTCTGCTTGCGGATATCTGGGCTGATTACTCCCCACCGGGCCAGGGGTACGTGCAGTTTGTTGCCGTTTCTGACATCCATATATGGTGTGTGACATCATACGATCTTATTTTCTACTGCCCGACGCATTTTTCTGTGGTGACATGGACACAGCTCAGGGGATCAGCGAGAATGATAGCTGTCAACAACGCCGGTGATGTCATTTGGTGCATTGATAAGAAGAATTACGCGCACGCTCGTTTCGGGATAAGCGCCAATCATTTAACAGGAAAGAATTGGCAGCCGGTGGAGAAAGACATGCGATACGTGACTGTGGAGCAATCGGCTGTGTGGGGAATAAAGCTAAATGGTGACGTTTTCGTCAGAACAGACGTGTCCAGGGAGCACCCGCCAGGCAAAGGATGGCGAACTATTATGGTTGACACCAAGTTTGTGCGGGCGTCTTGTTTTGACGGCTTGGCTTGGTTCCTGGATAAGGCGAACCTCATCCACGTTTTTAAAGTCGATCCAGATAAGTCCCAGATATTGGAAACAGGTAGGCTTGAGTTCCAGCCGTTTCGTGAGTCCGATGTTTCTGCAAAGTGGATCTGCCTCGGAATCGAAGGAGTCGCCTGGATTCTGGACATTAAAGGTTCACTTTGGTTTACCAACGTCACTCACGAACTTCCCACTGAAAACACATGGTATCAGGTCTCCCTTGGCCAATACTTGATGCAAAATCGCAGTTTACTCGACGCGCTGTGGTCTTGGGTTCTACGAGGTGATGACGTCAAACTTCTAACTGCGAGCCCCAAAGCGGGAGCTTCACATGGTCACTTGCTGGGAACTCGCTGGGATCCACAGACACCGCAGGGCATTGCCCAGTCGGTGTTCTGGTCGTATTTGTCTGCGGGCTCCTACAGAACTGATTCTGGTCACGTGTGGGCCTTGCAGCCAAATGGTGAGCTTATGTGCTTCCAGCCTGGAAACAGACCGATGATTGTCGAGCCTCCGCGCGGAAAAGTTTTAAAACTAATTTCGGCATCTGGCAACAACCTGTGGGCCATCACTCACAACTTTAAGCGTTCCGGAATTTCCGAATCTTGTCCGCAAGGTTTCGGCTGGGTGGAGCTAACGCTGCACCAGTTCGGCGTCGGTAAAGTTTTCCACCTCAGTTGCGGGGCGCTTAGCACTTGGGCTGTTGATGATGCGGGAAATGTCTGGTTGCGAATTGGAAAGGAGGACTCAGCAGATCCAACGGTGACTCAGGCTTGGATCCCGATGGATGGAAATCCTCCGCCTGGATGTCGCTTTGCTAAAATAGCCGTAAGCCCTGCGGATCGCGTTGTTTGGGCAGTGGATGATCGTAACAATGTGTATGCGCGCCGTGATGTCACGCCAAGTTTTCCTATAGGTACCTCTTGGGAGGTTGTCCCGGGCACTGGAGTGCGTGACTTAGCTATCAGTGAACATATGGTTTGGGCGACTTGTCCAAATGGTGATATCGTGTGTCGATACGGGGTCAGCGAGGACAATTGCTTGGGACACTACTGGAAGAAGGTACCTGGTAATTTTGAGCTGATCTCGGTCACTCCAGAAGATGAACTCTGGGCCATCGATCAGAATGGACAGCTGTTTTTACGTAAAACGCAGCATTTTTATGGAACCCAGTCCCCGTTCCGGCCACGAACCTATAGCGCGTTATTTTCGGGTGAGGAAGACTGGGAATTCATTTGA

Transcript

ANN21233-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005793 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19193 all species →	Tectonin	Tectonin domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR006624 all species →	Repeat	Beta-propeller repeat TECPR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23287 all species →	RUBY-EYE2-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032527 all species →	Biological Process	protein exit from endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23881	TECPR2; tectonin beta-propeller repeat-containing protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.