Gene detail

Detailed information of ANN21350-RA in Montipora grisea

Genomic Location: Scaffold_15__1_contigs__length_9942800:7025534...7027354
NR annotation: MCG8651605.1, sigma 54-interacting transcriptional regulator [Pirellulales bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06065	Regulatory protein AtoC OS=Escherichia coli (strain K12) OX=83333 GN=atoC PE=1 SV=2
P12627	Nitrogen fixation protein VnfA OS=Azotobacter vinelandii OX=354 GN=vnfA PE=1 SV=1
P12626	Nitrogen fixation protein AnfA OS=Azotobacter vinelandii OX=354 GN=anfA PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00158 all species →	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF16697 all species →	Yop-YscD_cpl	Inner membrane component of T3SS, cytoplasmic domain	Domain	Interproscan
PF02954 all species →	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan
PF13185 all species →	GAF_2	GAF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002078 all species →	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR025944 all species →	Conserved_site	Sigma-54 interaction domain, conserved site	Interproscan
IPR029016 all species →	Homologous_superfamily	GAF-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032030 all species →	Domain	YscD, cytoplasmic domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR025943 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR025662 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR002197 all species →	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR003018 all species →	Domain	GAF domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071 all species →	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN21350-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.