Gene detail

Detailed information of ANN21498-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:32776227...32796198
NR annotation: CAH3024233.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN21498-RA

ATGAGGCCTGGTAAGGAACAGAGAGATCTTTGTTGGGGTGATTTGCAGTTGAAGACTGATTCAGAAGGAAATCGCTTTGTCGAGTTCAGTCAGGAAAGACAAACGAAAACGCGCACTGGTGAAAACCCTCGAAATTTGAGGGAGAAAAAACCTCAAATGTACGAAAACAAGAACAATCCAGAACGCTGTCCTGTTAATACTTACTTGGCCTACAAAAATCATCGCCCTGCAGACATGATGACCGATGAATCTCCTTTCTATCTTGCTGTTAATATTGAAAGCCCGAAACCAGGTCAAAAGTGGTTTAAATGCTCCCCGCTTGGAGTCAGCATGCTCAAGAACATGATAAAAGACTCAGGACTGAAAACGGACAAAAAACTCGTGAATCACAGCACCAGAAAGCATTTGGTTCAGAAGCTGGTTGATAATGATGTACCTCCAAACGAAATCATTCAAATAACTGGACATAAAAACGTCAATTCGTTGAACAACTACTCAACTTTATCCGATAAGAAACAACAACAAATTTCTGCTGCGTTGTCTAACACTGCTAGCACCTCAAAAACCTTGTCAACTGTCTCAATAGAAGAGAAGACTGAGTCGGCTCGCTTTTTACCCGATTCATCTACAGGAAGTTTACTTCAAAACTGCAAAATCGGGACGATAAAGAAACACGATGGAGCTTCTCTGCAGTTCTTTGTTAGATGTGCTACCAAATTCAAGACATGTTATGTTGTATCACGTGGTGCCCTCATGTACCCGTCGTTAGTGGTCTGTCATCCGGACACTATCAAGGTCATGCAGAGTAGTGGTGCACCTAAAGGAGCTAATTACCGATTTTTCAAAGCTTTCATTGGTAAGTTTATGTCTGCATCCTCGCTGGCAAACCAGATTTTGAACGGATTGATTGCTTCAAGTGGAGACAAGTGGTTCAAAATGAGACGGCTTCTAACGCCAGCGTTTCATTTTGAGGTCCTTAAATCATACCTTAGAGTTTTTCAGGAATCCACGAACGTTCTATTGGACAAGTGGTCTGCACACGAAAATGATGAGGTAGAGCTGTTCCACCACATAAGTTTGATGACGCTGGACTCTATCTTCAAGTGCGCTCTTAGTTACCAAAGCAACTGTCAGACTGACGAGAAAAAGAATCCCTACATTAAAGCAGTTTCTGAGTCGTGTGACGCAGTCATGTCCAGGAATATGAATCCTATCCTACATATAGATGCCATTTATGAAATGACAGCAGCAGGTAAACAGTACGCTAAGAACTGTGACCTCGCGCGAGGCAAAGCCAAAGAAATAATCAGAGAAAGGAGAGCTACTTTACAGGACAATTTTGAATTTGTTGTTCCTTTAACAATCGCTACTTCCGCAGGTGGAGAAGGAGACCCTTGGAAAAAAGAAACGTTTGGACTTCCTGGACATCTTACTATCAGCAAGGGGCTAACATCAAGTCAATGTCCGGTGACTTCTGGTGTGCCCCAGGGTACAGTCCTCGGCCCATTGCTCTTTTTATTGTATATAAACGACTTACCAGACAACGTGCAATCATCAGTTAGGCTCTTTGCGGACGATGCTTTACTTTACGGCATTATCGCTAGCGATGCGGACTGTGACCTTCTTCAATCTGACTTACGTAAGCTAGAATCCTGGCAGTATCATTGGCAAATGGAGTTTAATCCTTCCAGATGCAAAATTGTTACCATCTCACATAAGAACAATCCACCCCAGAGAAAATATGTCTTCTGTGGTGTAGAGTTGGAACAGGTTGATAGCTTCCCATACCTTGGTGTTTCCATCAGTAACAAGCTCAAGTGGTCAGACCACGTTTCCATGACAGCAGCTAAAGCAAACAAATCGCTGGGTACAATACAACGCAACCTTTGGAATTGTCCAAAGAATGTAAAAGAAATTGCATATACATCCCTAGTTCGACCGAAGCTGGAATATGCAAGTGCGGCTTGGGACGCGTTTTTAAAGAAATATATCAGTGCTCTGGAAAGGGTTCAACGTAAAGCAGCATGGTTCTGCTCACAGAATTATAATAGATATGCTAGTGCTACGGACATGATTAAACTTAGGGATGAACGTGGAGAAGGTTTGACGGAGGAGGAAATCATTTCCGAAGTCATGACGTTTATGTTTGCAGGACATGATACAACCGCGAGTTCTATCTCATGGACATTGTACAATCTGGCACGGTTTACGGAACACCAGGAAAAATGTCGAGAGGAGGTTGAAGAAGTGTTTGGAGATGAGGAAGAGTTTGAATGGAACGATCTTAATAAACTGAAGTATCTTCAGATGTGCATCAAGGAGTCAAACAGGCTGCATTCCGTTGTCCCCTCAACTAGCCGTTTATTGGACAAACCTTACGAGATTGATGGAAAAGTGGTACCTGAAGGGACATGGGTGATATCTCATTTATTTTCCTTGCATCGCAATCCACATGTGTGGAAGGACCCAGAGAAATATGATCCTCTTCGTTTCACTAACGAAAACATGAAAGCAAAGTCCCCATTCGCGTACGTTCCTTTCTCTGCTGGACCCAGAAATTGCATCGGCCAAGCGTTTGCTCTGGCTGAGGTGAAGACCACGGTAGCAATGATTCTTCGCAAGTTTGAGTTGAGCGTCGCTGCACACAACATCATACCGGACGAAGATCTGCAACCTCATGTAATTCTTCGAGCGAAAAACGGCATCAAAGTGAAACTTTCACCTCGGGCCAAGGCTTGA

Transcript

ANN21498-RA

Protein

Uniprot

Uniprot term	Description
P51871	Cytochrome P450 4F6 OS=Rattus norvegicus OX=10116 GN=Cyp4f6 PE=2 SV=1
Q9HBI6	Cytochrome P450 4F11 OS=Homo sapiens OX=9606 GN=CYP4F11 PE=1 SV=3
P33274	Cytochrome P450 4F1 OS=Rattus norvegicus OX=10116 GN=Cyp4f1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF12012	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan
PF00067	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR050196	Family	Cytochrome P450 Monooxygenases	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR021893	Domain	Domain of unknown function DUF3504	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001128	Family	Cytochrome P450	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24291	CYTOCHROME P450 FAMILY 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan