Gene detail

Detailed information of ANN21622-RA in Montipora grisea

Genomic Location: Scaffold_17__1_contigs__length_5665553:2927629...2931261
NR annotation: MXY26979.1, 30S ribosomal protein S1 [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN21622-RA

ATGAACAACGAACAGGCAAGTATAAACACATCCACTGTTGATGTGGAAGAAAAAAAGCACTCAACTGAAAGTTCGGTTGAAGTGAGTCAGGACGTAGCAAGTGAAACAGAAGCTCCAGAAGCTGCACAAGCAGCTTCTGCAACCCACGCAGAGATTGAGGAGCATGAAGAAGTCCCAAGCGGTGAAGTAGAAGCGACTGCAGGGGATACTGATTCTGACCAGACGGCAACCTCTACTGATAAACCCACACTTGAGCAGACAGATGAGAGGGCACCAGAGGGGGCGGTAGAAGCGACTGTTAGCGAGGCTGATAGTGCAGACGTGACGGAGCTTACTGATGAAACTACACCTGAAGAGCAGGCGGAGGCGGTTGTTAGGGAGACTGATGCTGAGCAGGCAGGTGAAAGCGCGTCTGAAGTGACGGCAGCTGCACCTGAAAAGCCACCGGAGCCGATGAGTGCTGAGTCTCTTGAAGAGGCGTATGACAATTCGATCAAGGCGTTTACCGACGGTGAGATTGTTAAAGGTGTTGTAGTAGATGTTACCCGCGATGAGGTAATGATCGATATAGGCTTTAAGTCGGAAGGCTACATTCCAGCATCAGAATTTGATACTGGTGAAAACGATTTACCCGCTGTGCAGGTTGGCGATGAAATTGATGTCTACATTGTACGGCGTGAAGATGCAGAAGGGCAGATAGTCCTTTCAAAGAAGATAGCTGACCAAACACTCATTTGGGATGAAATTGCGGCTGCACATGAGAATAATACCCCGGTCCAAGGTCGTATCACCGAACGGATTAAGGGCGGATTACGGGTAATGATAGGCTCCCTACTTGGTTTTTTACCGACATCACAAGTTGAGTTGCGTCCTATCCAGAACCTTGAACAGTATGTAGGGCAGACGCTTGATATGATGGTTATTAGTTTGAGCAAGCGCCGCCATAACATTGTTTTGTCTCGTCGGGCGTGTTTGGAAGCTGAACTTGCGCATAAGCGAGCGGAAGTTCTTAGCACACTTGAAGTGAATCAACTTGTCAAAGGTGTGGTAAAAAATATTACCGCTTTTGGTGCGTTTGTGGACTTAGGTGGTGTTGATGGGTTACTCCATAAGACGGATATGGCATGGAAGCGTATCCGGCATCCGTCTGATGTTGTCTCGGCTGGGGAAGAGCTTGAAGTCCAGGTTATCGGTATCAATCCAGAGAACGAAAAGATCTCATTGGGTTTGAAGCAGAAAACACCGGATCCATGGGAAAATATTGCGGAAAAATACCCAATTGGTTCCACAGTTCAAGGTGTGGTTGTGAATATTGTTAACTATGGAGCGTTCTTACAGCTTGAAGAAGGCGTTGAGGGGCTAATTCATGTCTCTGAAATGGCATGGACCCGCCGCAATGTAGCACCGTCACGGATTGTCAACAAGGGCAGTGAGATTGAAGCTGTTGTGCTTGAAATCTCAAGAGAGGACAAGCGAATTTCACTTGGACTCAAGCAGTTGCAACAGAATCCTTGGGAACTCTTGGAACAGCGTGCTCCGGTTGGTAGCAAAATTACAGGACGTGTTCGAAACTTAACAAATTTTGGTGTATTTGTTGAAATTGAGCCTGGGATTGATGGTTTAATCCATACTTCAGATCTCTCGTGGACGAAACGTGGTGCTGCAGCTAGCCAAGTGCTTAAGGAAGGTAGTGAGGTTGAGGTAGTCGTGCTTCAAATTGAGGCTGCTGAACGTCGGGTCTCGTTGGGACTCAAGCAGACGCAGCCTGATCCTTGGGAAGTGGTCCCAGAGAAATACAAGGTCGGTTCTGTTGTCCGAGGTACAATTGTTAATCTCACCAGTTTTGGTGCATTTACCAAGCTTGAGGAAGGTATCGAAGGCTTAATTCACATCTCCGAACTCGCAGACCGGCGAATTGAAAAACCAGAAGAGGTCGTTTCGGTAGGAGATGAATTAGACTTAAAAGTGATTAACCTGTTTCCAAAAGACCGGCGCATCGGACTTAGCCTGAAAGCACTCGTTGCGGAGCAAGAGCGTGCAGCGGTGCCTGATGAGGAACAGTCAAGGGAAAACGAGAAACGGTCTGAGCAGCCATCTCGTCCACGGCGTGAACGACCATCTCGACGCCAGACGCCTGCACCCGAGGAGACTGTCACCACATTAGGAACGCTCCTGAAAGAAGAAATGGACTGTGATACGGCGTGGAAATACATACGTAGACTGGGAGACCCAGAATTGAGAAAAAATTTTCTGTTTACGTCTGAATCTGTCACTGAGGGACACCCGGACAAAATCGCTGACCAAATCTCTGATGCGGTGCTTGATGCTATACTCGCAAGCGATCCTATGGGCAGAGTTGCTTGTGAGACTTTGATTACAACTGGACTTGCTGTCATCACTGGCGAAATCACCACAACTGTAAACTACGACGATAAGCAAATTGCTCGACGCGTATTAGCCGATATCGGTTACACCGATGTTGAATACGGTTTTGACGCGGAACGCAGTGCTGTGCTAAGCGTTATTGATAAGCAGTCCCCGGATATAGCCAGGGGTGTAAATCCAGGTGGCGCGGGTGACCAAGGCTTAATGTTTGGGTATGCCTGCACCGAAACACCAGAATTAATGCCATTGCCGATTACTCTTGCTCATCAATTGACACGGCGCTTGGCAGAAGTTCGTAAAAATGGATCCCTTCCCTTTATCCGTCCGGATGGAAAGTCTCAAGTAACTGTTGAATATGTAGATAGCAAACCTAAAGCTGTCACCACGGTCGTCATTTCTGCACAGCACGACCCTGACGTTGTGGATATCCGACTTCAAGAGGCAATCATTGAAGAGGTTATCAAAAAAATTATACCTGAAAATCTCCGAAGCCCGGACATAAAGTATCATATCAATCCAACTGGACGTTTTGTAACGGGAGGACCGCAAGGTGATGCCGGGTTGACAGGACGAAAAATTATTGTCGATACATATGGGGGTATGGGACGGCACGGTGGTGGTGCGCTCTCTGGGAAAGATCCAACTAAAGTAGATCGAAGTGCGGCGTATGCATCGCGACATGTTGCTAAAAATCTTGTGGCTGCTGGGCAGGCCGAACGTTGTGAAATTCAAATATCTTATGCAATCGGTAGAAAAGATCCGATCTCTGTTATGGTGGATACCTTCGGCACAGGGGATGATGAAGCCCTTACGAAACTCGTCAACGCGCATTTCGACTTAACCCCGCTTGGCATTATTGAGCGGTTGAAATTACGTCAACCTATCTATCAAAATACTGCTGCCTATGGACATTTTGGGCGCGAGGAACCTGGCTTTACTTGGGAAGAAACCGATTACATCGAAAAACTCCGATAA

Transcript

ANN21622-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P38016	Small ribosomal subunit protein bS1 OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=rpsA PE=3 SV=2
Q9Z8M3	Small ribosomal subunit protein bS1 OS=Chlamydia pneumoniae OX=83558 GN=rpsA PE=3 SV=1
O84100	Small ribosomal subunit protein bS1 OS=Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx) OX=272561 GN=rpsA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012568 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00438 all species →	S-AdoMet_synt_N	S-adenosylmethionine synthetase, N-terminal domain	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF02773 all species →	S-AdoMet_synt_C	S-adenosylmethionine synthetase, C-terminal domain	Domain	Interproscan
PF02772 all species →	S-AdoMet_synt_M	S-adenosylmethionine synthetase, central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR035104 all species →	Family	Ribosomal protein S1-like	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR022628 all species →	Domain	S-adenosylmethionine synthetase, N-terminal	Interproscan
IPR000110 all species →	Family	Small ribosomal subunit protein bS1	Interproscan
IPR002133 all species →	Family	S-adenosylmethionine synthetase	Interproscan
IPR022631 all species →	Conserved_site	S-adenosylmethionine synthetase, conserved site	Interproscan
IPR022636 all species →	Homologous_superfamily	S-adenosylmethionine synthetase superfamily	Interproscan
IPR022630 all species →	Domain	S-adenosylmethionine synthetase, C-terminal	Interproscan
IPR022629 all species →	Domain	S-adenosylmethionine synthetase, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11964 all species →	S-ADENOSYLMETHIONINE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004478 all species →	Molecular Function	methionine adenosyltransferase activity	Interproscan
GO:0006556 all species →	Biological Process	S-adenosylmethionine biosynthetic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN21622-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.