Genomic Location: Scaffold_17__1_contigs__length_5665553:3237267...3238019
NR annotation: MYB96430.1, pyridoxine 5'-phosphate synthase [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN21641-RA |
| Transcript |
| ANN21641-RA |
| Protein |
| ANN21641-RA |
| UniProt accession | Description |
|---|---|
| B0SBH6 | Pyridoxine 5'-phosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) OX=355278 GN=pdxJ PE=3 SV=1 |
| B0SJ25 | Pyridoxine 5'-phosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) OX=456481 GN=pdxJ PE=3 SV=1 |
| B2RIJ5 | Pyridoxine 5'-phosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) OX=431947 GN=pdxJ PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015805 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03740 all species → | PdxJ | Pyridoxal phosphate biosynthesis protein PdxJ | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004569 all species → | Family | Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ | Interproscan |
| IPR013785 all species → | Homologous_superfamily | Aldolase-type TIM barrel | Interproscan |
| IPR036130 all species → | Homologous_superfamily | Pyridoxine 5'-phosphate synthase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30456 all species → | PYRIDOXINE 5'-PHOSPHATE SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0008615 all species → | Biological Process | pyridoxine biosynthetic process | Interproscan |
| GO:0033856 all species → | Molecular Function | pyridoxine 5'-phosphate synthase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03474 | pdxJ; pyridoxine 5-phosphate synthase | EC:2.6.99.2 | Vitamin B6 metabolism | ko00750 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
