Genomic Location: Scaffold_17__1_contigs__length_5665553:4929604...4931079
NR annotation: RKU35031.1, NADH-quinone oxidoreductase subunit NuoF [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN21738-RA |
| Transcript |
| ANN21738-RA |
| Protein |
| ANN21738-RA |
| UniProt accession | Description |
|---|---|
| P56913 | NADH-quinone oxidoreductase subunit F 2 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=nuoF2 PE=3 SV=2 |
| A8F0M0 | NADH-quinone oxidoreductase subunit F OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=nuoF PE=3 SV=1 |
| Q92JB2 | NADH-quinone oxidoreductase subunit F OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=nuoF PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004070 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10589 all species → | NADH_4Fe-4S | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | Domain | Interproscan |
| PF10531 all species → | SLBB | SLBB domain | Domain | Interproscan |
| PF01512 all species → | Complex1_51K | Respiratory-chain NADH dehydrogenase 51 Kd subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019575 all species → | Domain | NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | Interproscan |
| IPR037225 all species → | Homologous_superfamily | NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily | Interproscan |
| IPR019554 all species → | Domain | Soluble ligand binding domain | Interproscan |
| IPR037207 all species → | Homologous_superfamily | NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily | Interproscan |
| IPR001949 all species → | Conserved_site | NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site | Interproscan |
| IPR011538 all species → | Domain | NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43578 all species → | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0051539 all species → | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| GO:0008137 all species → | Molecular Function | NADH dehydrogenase (ubiquinone) activity | Interproscan |
| GO:0010181 all species → | Molecular Function | FMN binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00335 | nuoF; NADH-quinone oxidoreductase subunit F | EC:7.1.1.2 | Oxidative phosphorylation | ko00190 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
