Gene detail

Detailed information of ANN21768-RA in Montipora grisea

Genomic Location: Scaffold_17__1_contigs__length_5665553:5457101...5458623
NR annotation: KAF1856015.1, hypothetical protein Lal_00003803 [Lupinus albus]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C4XLK2	Small ribosomal subunit protein uS4 OS=Solidesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) OX=573370 GN=rpsD PE=3 SV=1
A5D5E8	Small ribosomal subunit protein uS4 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) OX=370438 GN=rpsD PE=3 SV=1
A4J138	Small ribosomal subunit protein uS4 OS=Desulforamulus reducens (strain ATCC BAA-1160 / DSM 100696 / MI-1) OX=349161 GN=rpsD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0016724 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00416 all species →	Ribosomal_S13	Ribosomal protein S13/S18	Family	Interproscan
PF00411 all species →	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan
PF01479 all species →	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR010979 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan
IPR001892 all species →	Family	Small ribosomal subunit protein uS13	Interproscan
IPR036967 all species →	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan
IPR005709 all species →	Family	Small ribosomal subunit protein uS4, bacterial-type	Interproscan
IPR027437 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13, C-terminal	Interproscan
IPR019980 all species →	Family	Small ribosomal subunit protein uS13, bacterial-type	Interproscan
IPR018079 all species →	Conserved_site	Small ribosomal subunit protein uS4, conserved site	Interproscan
IPR001971 all species →	Family	Small ribosomal subunit protein uS11	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR018102 all species →	Conserved_site	Small ribosomal subunit protein uS11, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10871 all species →	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN21768-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.