Gene detail

Detailed information of ANN21779-RA in Leptoseris scabra

Genomic Location: Scaffold_4__1_contigs__length_45231618:37893764...37900219
NR annotation: CAH3145968.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN21779-RA

ATGCATCTTCTGTCTAGGGCAAAAGAAAAGCGACTGTCGACACCAACGTTATTAAGAAAAGAAAAAGGAAAGAGCTTGTGTTATTCTGGCATACGTCAGCTTGCTTCCGGGAAAATCGAAATCGGAGTTCACTGCTTGCAGAAAGCTATTTTGGAATTAAACGACAGCGTAGATCAGGTTATCCTAAAGCTTCTCGTTTTCCAGATCCTTGCCGTGTATTATAAGTTCCTAAATAATTCGTCAATGTCAGCGCATTATTACAATAAGGCAACCCAGCAATGCAGAGAAGTAGGAGACAAGCAGCTACTTATTATTACACCAATAGAAAACAGAGAAAAGAAAACGAAACCTCACACAGACATGGACATCGTGCACAATCAGCCACTAAAATCAGAACTTAATTTGCTTCTTTGCGAAGCAGCAAACAGTTTCTGTGATAAAGAGGATAAGGAACATTTACGTCATAACATGCTACGACTTTTAGAGGAAATTCAAACACAATTCCCAGTTTCCGTTGGATTATGCAATTTTAACCGCATTGTTGTATTCATTATCGTCTGTTGCAATGAAATTAAAGACCCACGGAAACTGTACCAAACAAATATCAGTTACCATAAAGGATCTCTCGAAAAATGCAAAGGATCTGTTGATTTACAGCAAGTACAAAAGGAAACTCTCGTCAAGTGTTACCTTGATCTTGGACAGTTCCACCTCAATAAAGAGAACTATCCGGACGCTCTCCACGCATATGAGCGTGCACTCGGTATAACTCTGAAGCATTTTGGAGAGGAACACACAAAGACAGCTGAAAGTTACCATCAGAAAGGGATCACGCAACTTAAGCTTGGTGACTACACCTCTGCTCTGCAGTCACATCAGCACGCGTTAGATGTTAGAAGAAAACTGTTTGGAGAAGAACATGCAAACACCGCTGATAGTTACCGTGAGATCGGGGTCGCACATTATCACCTTGGTCACTACACCTCTGCTCTCCAGTCACACCAGCGCGCGTTAGATGTTAGAAGAAAACTGTTTGGAGAAGAACATACAAGCACAGCTGATAGTTATCTTGATATCGGGGTCACACAACATCAGCTTCGTGACTACACCTCTGCTCTGCAGTCACATCAGCGCGCGTTAGATGTTAGAAGAAAACTGTTTGGAGAAGAACATGCAGACACAGCTGATAGTTATCTTTCACTCGGGATCACACAACGTCAGCTTCGTGACTACACCTCTGCTCTCCAGTCACAACAGCAAGTATTAGATGTTAGAAGAAAACTATTTGGAGAAGAACATGTATTAACAGCTAATGATTACCATTCAATCGGGGTCTTACAATATGACCTTGGTGACTACACCTCTGCTCTCCAGTCACACCAGCACGCGTTAGATGTTAGAAGAAAACTGTTTGGAGAAGAACATACCAGCACAGCTGATAGTTACCGTGAGATCGGGGTCACAAAACATCAGCTTGGTGACTACACCTCTGCTCTGCAGTCACATCAGCACGCGTTAGATGTTAGAACAAAACTGTTTGGAGAAGAACATGGAAAGACCGCTGATAGTTACCATTCAATCGGGGTCACACAATATGAGCTTGATGACTACACCTCTGCTCTTCAGTCACACCAGCACGCGTTAGATGTTAGAAGAAAACTGTTTGGAGAAGAACATACAAGCACAGCTGATAGTTACCATGAGATCGGGTTCTTGCATTATCAGCTTGGTGACTACACCTCTGCTCTCCAGTCACACCAGCACGCGTTAGATGTTAGAAGAAAACTGTTTGGAGAAGAACATGCAAACACCGCTGATAGTTACCATGTGATCGGGATCACACAATATCAGCTCGGTGACCACAAGTCTGCTCTCCAGTCACACCAGCACGCGTTAGATGTTAGAAGAAAACTGTTTGGAGAAGAACATACAAGCACAGCTGATAGTTACCATGAGATCGGGTTCTCGCATTATCAGCTTGGTGACTACACCTCTGCTCTCCAGTCACACCAGCACGCGTTAGATGTTAGAAGAAAACTGTTTGGAGAAGAACATACAAGCACAGCTGATAGTTACCATGAGATCGGGTTCTCGCATTATCAGCTCGGTGACTACACCTCTGCTCTCCAGTCACACCAGCACGCGTTAGATGTTAGAAGAAAACTGTTTGGAGAAGAACACGGAAGTACGGTTGCTAGTTACCGTAACCTCGAGCATACACAGCGTGCGTTACGTGACTCCTCCTCAGCTCGCCAATCATACCTGCGTGGACATTGCGCTAAATCTTCGCCAACAGCATCCTGGCAGTACCTTCAAATCACTTTTACTTGGATCCGTCGCGTCGAAGCGCTCTAA

Transcript

ANN21779-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12543	lapE; outer membrane protein, adhesin transport system	-	Secretion system	ko02044	deepkoala