Gene detail

Detailed information of ANN21781-RA in Montipora grisea

Genomic Location: Scaffold_17__1_contigs__length_5665553:5591386...5594253
NR annotation: RKU37782.1, transcription termination factor Rho [Candidatus Poribacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN21781-RA

ATGGAGAGCTTGGACATTGGCAAGCTCCAAGAAATGGAGTTCTCGGAACTCAAAGGCTTTGCGCTGACACTCGGGATGAGTGAATATGCCGGGTCTCGGAAAGAGGAATTGATCAACGAAATCATAGAGTTTAAATCTGAGGGGGATATCCAATTTTACGGTGGTGGTGTTCTGGAAATCTTAGATGACCGGGATCAGCGCTATGGTTTTCTCCGCTCACCACGCTCTAATTATTTGCAGAGTAACGAGGATATCTATGTATCGTCGTCGCAAATCCGGAGATTTGATTTGCAAACAGGTCACGTCGTTGAAGGTGTGATTCGTCCGCCCAAGAAGACAGAGAACAAAACCGAACGTTACTTTGCCATGTTACAGATCGAGAAAGTCAACGGAGAGAAACCGGAAGCTGTAAAACAGAAAATCCCTTTCGACAACCTCACGCCTGTCTATCCATACGATCAACTGAAACTGGAACACAATGACTCGGAATTCGCGACCCGCATGGTGGATTTAATGGCACCAGTTGGTAAAGGCCAGCGCGGATTGATTGTCGCGCCCCCTTACAGTGGCAAAACTACGTTATTGAAGAACATCGCCGCGGGTATCGAATCGAATCACCCTGAAGTGTCCCTCATCTTTCTCCTAATTGACGAACGTCCAGAAGAAGTCACAGATGTCGCCCGCTCTGTCAAAGGAGAGGTAATTAGCTCAACTTTCGATGAGTACCCTGAACGACACATTCAAGTTGCTGAAATGGCCGTCGAGAAAGCCAAGCGGTGGGCTGAATATGGAAAAGATGTTGTCATTTTATTAGATAGTCTGACCCGACTCGCGCGAGCCTACAATTTAACGGCCCCACATAGTGGCAAAACGTTAACAGGTGGCTTAGATCCTCTGGCACTTGTGAAGCCGCGTCAGTTCTGCGGTGCGGCGCGAAAGTTTGAAGAAGGCGGTAGTCTCACGGTTATAGCATCCGTCCTCGTGGGTACTGAAAGCCGTGGAGATGAAGCCATCTATGAGGAATTTAAAGGGACTGCGAATATGGAAATCCACTTGGAACGTTCCCTGCTAGATCGACGGATCTTCCCATCGATTAACCTCGAAAAGTCAAAGACGCGCCGTGAAGAACTGTTGTTAGCCCCTGATGTGCTTAATAAAGTCTGGGTGCTGCGGAAATTCGCTAGTCAGATGGATAGCGCGGAATCACTTGAAATGCTCGTTGAACAATTTGGTAAGACTACCACGAACGAGGAGTTTCTCGAACGGATGGTCGACAATGCTGGCTATAGCAGTACGCCTGCGAGAAACAACAATCGTCTGAAACGGCACGGGGCGGCTTCTACGAAAAATGCGACGAATAGCCTTCACTTTCAACAGCTAATGGCAAGTTTCAGCTTGCAAGCGGTGTCAAAAATGTTTGAAAAACTCAAAGATATTGAAGCTAAATATGCCGAAGTTGAAAGATCACTCGGCGATCCAGCGCAGATCTCAAATCAACAACGGTTGATGGAGTTATCCAAAACACACGCCGAACTCTCCCCTATCGTATCCACGTATCAGAAGTACCAGCAGTTAGAATCAGCACTCGAAGAGACGCTGCTCATGTTAGAATCTGAAACGGAGGAAGAAATAGTGGGGTTAGCACAAGAAGAAGTGGAAAGCCTCACTGCGCAAAAGGAAGAATTAACAGAAGAATTGAAGCTGCTTCTGATTCCAAAAGACCCGGACGATGAAAAAAACGTTATCATCGAAATTCGGGCAGGCACAGGTGGAGAAGAAGCCAGTCTCTTTGCGGCTGAACTATTTCGGATGTATACCCGATACGTCGAGCGGCAAAACTGGAAACTTGAAATCCTCAATTCAAATGCGACAGGGTTGAAAGGATTCAAAGAGATTATCTTTTCAATTGACGGGACACGGACGTATAGCCAGCTGAAATTCGAGGGTGGTATCCACCGGGTACAAAGAATTCCGGCAACAGAAGCAAGCGGTCGTATTCACACGTCTGCAGCGACAGTAGCCGTTCTTCCTGAAGCAGAAGAACTCGATTTAGCAATCGATGAAGCAACCGAATTGCGAATCGATACCTACCGTTCCTCAGGTCCGGGTGGACAAAGTGTTAACACAACCGACTCGGCTATCCGAATTACACACATTCCAACCGGGCTGATTGTAACGTGTCAAGACGAGAAATCTCAACATAAGAATCGCTCCAAAGCAATGAAGATTCTCCGAGCCCGCCTCCAGGAGAAAAAGCAGTCTGAACTTAACAGTGAAAGAGCAGAAACGCGTCGGTCAATGGTTGGAAGTGGTGACAGGAGTGAGAAGATTCGCACTTACAACTTTCCCCAATCCCGTGTTACAGATCATCGGATCCAATTTAGCACCTACCAATTAGATTCCGTTTTAGATGGAGATTTGCAGGAATTTATTGATCGGTTGACGACTGCTGACCAAGCAGAGAAATTAAAAGAAACTTGA

Transcript

ANN21781-RA

Protein

Uniprot

Uniprot term	Description
P52155	Transcription termination factor Rho OS=Pseudomonas fluorescens biotype C OX=335 GN=rho PE=3 SV=1
Q9HTV1	Transcription termination factor Rho OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rho PE=3 SV=1
P44619	Transcription termination factor Rho OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rho PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07497	Rho_RNA_bind	Rho termination factor, RNA-binding domain	Domain	Interproscan
PF03462	PCRF	PCRF domain	Domain	Interproscan
PF00472	RF-1	RF-1 domain	Family	Interproscan
PF00006	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041703	Domain	Transcription termination factor Rho, ATP binding domain	Interproscan
IPR004373	Family	Peptide chain release factor 1	Interproscan
IPR005139	Domain	Peptide chain release factor	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011113	Domain	Rho termination factor, RNA-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045853	Homologous_superfamily	Peptide chain release factor class I superfamily	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR000352	Domain	Peptide chain release factor class I	Interproscan
IPR000194	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR004665	Family	Transcription termination factor Rho	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46425	TRANSCRIPTION TERMINATION FACTOR RHO	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006415	Biological Process	translational termination	Interproscan
GO:0016149	Molecular Function	translation release factor activity, codon specific	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006353	Biological Process	DNA-templated transcription termination	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003747	Molecular Function	translation release factor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0008186	Molecular Function	ATP-dependent activity, acting on RNA	Interproscan